HsaEX6016300 @ hg38
Exon Skipping
Gene
ENSG00000184611 | KCNH7
Description
potassium voltage-gated channel subfamily H member 7 [Source:HGNC Symbol;Acc:HGNC:18863]
Coordinates
chr2:162517730-162528360:-
Coord C1 exon
chr2:162528184-162528360
Coord A exon
chr2:162527923-162528087
Coord C2 exon
chr2:162517730-162518158
Length
165 bp
Sequences
Splice sites
3' ss Seq
ACTGAATGGGCATTACTCAGATT
3' ss Score
0.48
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GCTTAGTAAACAAGTAACATGAATGAAGAAGGCCAGGAGTAAAAATATAGAGAGAAGTGAAGACTGGAAAACTGGAGAACATCTTTATCTTATTTGAAGTGGCCCATAACCCTTCAGCTCTACTTCATGGCAGGGACATTTTATTTTCTTCCATATAGACCTAATATTTTGCAAATA
Seq A exon
ATTGCCTGCCAATGGTTCTTCAAGTGTGAGACCATCAGCATCACCTTGCAATGTGTTTGAAGTGCAAGTTCTTGGGCCCTACACCAGAACAACTGATTCGGAAACACAGAAATTCACCAAGCTGTGTTTTAACAAACACTTCAGGTCATTCTGATGCCCAAGAAG
Seq C2 exon
GGAAATTTTTTGGGTTCAAATTCCCTGGTCTGAGAGTTCTCACTTACAGAAAGCAGTCCTTACCACAAGAAGACCCCGATGTGGTGGTCATCGATTCATCTAAACACAGTGATGATTCAGTAGCCATGAAGCATTTTAAGTCTCCTACAAAAGAAAGCTGCAGCCCCTCTGAAGCAGATGACACAAAAGCTTTGATACAGCCCAGCAAATGTTCTCCCTTGGTGAATATATCCGGACCTCTTGACCATTCCTCTCCCAAAAGGCAATGGGACCGACTCTACCCTGACATGCTGCAGTCAAGTTCCCAGCTGTCCCATTCCAGATCAAGGGAAAGCTTATGTAGTATACGGAGAGCATCTTCGGTCCATGATATAGAAGGATTCGGCGTCCACCCCAAGAACATATTTAGAGACCGACATGCCAGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184611-'6-14,'6-13,7-14
Average complexity
C3
Mappability confidence:
88%=75=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.525
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENST00000332142fB17984
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCTACTTCATGGCAGGGA
R:
GTGTCATCTGCTTCAGAGGGG
Band lengths:
246-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains