HsaEX6016815 @ hg19
Exon Skipping
Gene
ENSG00000115966 | ATF2
Description
activating transcription factor 2 [Source:HGNC Symbol;Acc:784]
Coordinates
chr2:175994866-176001214:-
Coord C1 exon
chr2:176001140-176001214
Coord A exon
chr2:175997423-175997485
Coord C2 exon
chr2:175994866-175994935
Length
63 bp
Sequences
Splice sites
3' ss Seq
TGGTTTGTATCTATTTAAAGATA
3' ss Score
6.29
5' ss Seq
CTGGTGAAT
5' ss Score
3.53
Exon sequences
Seq C1 exon
TATTCTTGCCATGAGAAAAAGAATGTGATAAGTTATTCAACTTATGAAATTCAAGTTACATGTGAATTCTGCCAG
Seq A exon
ATACTGAATTCATTACTTAAAACCACCCAGAAGAGAAACCTCCAGGCTCAGATAGCTTCACTG
Seq C2 exon
GCAATACAAGGACCTGTGGAATATGAGTGATGACAAACCCTTTCTATGTACTGCGCCTGGATGTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115966-'4-10,'4-9,5-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138941=zf-C2H2_4=PU(34.6=37.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGCCATGAGAAAAAGAATGTGA
R:
CACATCCAGGCGCAGTACATA
Band lengths:
137-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)