MmuEX0006579 @ mm10
Exon Skipping
Gene
ENSMUSG00000027104 | Atf2
Description
activating transcription factor 2 [Source:MGI Symbol;Acc:MGI:109349]
Coordinates
chr2:73863169-73873745:-
Coord C1 exon
chr2:73873670-73873745
Coord A exon
chr2:73870623-73870685
Coord C2 exon
chr2:73863169-73863238
Length
63 bp
Sequences
Splice sites
3' ss Seq
TAATTTGTATCTATTTAAAGATA
3' ss Score
5.77
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TGTCTTTGCCATGAAACAGAGGACATGATAAACTGTTTACCTTAATGAAATTCAAGTTGCATGTGAATTCTGCCAG
Seq A exon
ATACTGGATTTATGACTTAAAACCTTCCCACAGAGAAAATCCCAGGCTCATATAGCTTCACTG
Seq C2 exon
ATAAAACACGGACCTGTGGAATATGAGTGATGACAAACCCTTTCTATGCACTGCCCCTGGGTGTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027104-'11-16,'11-8,14-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.071
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTGCCATGAAACAGAGGACA
R:
CAGGGGCAGTGCATAGAAAGG
Band lengths:
133-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types