HsaEX6021027 @ hg19
Exon Skipping
Gene
ENSG00000141048 | MYH4
Description
NA
Coordinates
chr17:10364233-10366505:-
Coord C1 exon
chr17:10366407-10366505
Coord A exon
chr17:10366182-10366285
Coord C2 exon
chr17:10364233-10364371
Length
104 bp
Sequences
Splice sites
3' ss Seq
GTTCTTTTCCATGTGTTCAGAAA
3' ss Score
7.22
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
ATCTGCTAGAGAAGTCCCGAGTTACTTTTCAGCTAAAGGCTGAAAGAAGCTACCACATATTTTATCAAATCCTGTCCAATAAGAAACCAGAGCTCATTG
Seq A exon
AAATGCTTCTGATCACCACCAACCCATATGACTTCGCATTTGTCAGCCAAGGGGAAATTACTGTGCCCAGCATTGATGACCAGGAAGAGCTGATGGCCACAGAT
Seq C2 exon
AGTGCTGTGGACATCCTGGGTTTCACTGCTGATGAAAAGGTGGCCATTTACAAGCTCACTGGAGCCGTGATGCATTATGGGAACATGAAATTCAAGCAAAAGCAAAGGGAAGAGCAGGCAGAGCCAGATGGCACGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141048-'9-10,'9-9,10-10=AN
Average complexity
A_NA
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.234
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCTAGAGAAGTCCCGAGT
R:
CTCTGCCTGCTCTTCCCTTTG
Band lengths:
221-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)