MmuEX7034404 @ mm10
Exon Skipping
Gene
ENSMUSG00000057003 | Myh4
Description
myosin, heavy polypeptide 4, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339713]
Coordinates
chr11:67243223-67244735:+
Coord C1 exon
chr11:67243223-67243321
Coord A exon
chr11:67243425-67243528
Coord C2 exon
chr11:67244597-67244735
Length
104 bp
Sequences
Splice sites
3' ss Seq
GCTCTTTTCCATGTGTCCAGAGA
3' ss Score
5.82
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
ATCTGCTAGAGAAGTCCAGAGTCACCTTCCAGCTCAAGGCTGAAAGGAGCTACCACATCTTCTACCAAATCATGTCCAATAAGAAACCAGAGCTTATTG
Seq A exon
AGATGCTTCTGATCACCACCAACCCATATGACTTTGCTTACGTCAGTCAAGGTGAAATCACAGTGCCCAGCATTGATGACCAGGAAGAGCTGATGGCCACAGAC
Seq C2 exon
ACTGCTGTTGATATCCTGGGATTCAGTGCAGATGAAAAGGTGGCCATTTACAAGCTCACAGGCGCTGTGATGCATTATGGGAACATGAAATTCAAGCAAAAGCAAAGGGAAGAGCAGGCTGAGCCAGACGGCACCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057003-'6-21,'6-10,17-21=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.277
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
PF0006316=Myosin_head=FE(5.0=100)
C2:
PF0006316=Myosin_head=FE(6.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAGAGAAGTCCAGAGTCACCT
R:
CTCAGCCTGCTCTTCCCTTTG
Band lengths:
218-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types