RnoEX0056943 @ rn6
Exon Skipping
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53761552-53795205:+
Coord C1 exon
chr10:53761552-53761722
Coord A exon
chr10:53784052-53784155
Coord C2 exon
chr10:53795079-53795205
Length
104 bp
Sequences
Splice sites
3' ss Seq
ACCCTTTTCCATGTGTCCAGAGA
3' ss Score
6.85
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
GCCGCCATGATGGCGGAGGAGCTGAAGAAGGAGCAGGACACCAGCGCCCATCTGGAGCGGATGAAGAAGAACCTGGAGCAGACGGTGAAGGACCTGCAGCACCGTCTGGACGAGGCTGAGCAGCTGGCGCTGAAGGGCGGCAAGAAGCAGATCCAGAAACTGGAGGCCAGG
Seq A exon
AGATGCTCCTGATCACCACCAACCCATATGACTTTGCTTACGTCAGTCAAGGTGAAATCACAGTGCCCAGCATTGATGACCAGGAAGAGTTGATGGCCACAGAC
Seq C2 exon
GGGAACCTTGAGAAGATGTGCCGCACCCTGGAGGACCAACTGAGTGAAGTGAAAACCAAGGAGGAGGAGCAGCAGCGCCTGATCAATGAGCTGTCAGCCCAGAAGGCACGCTTACACACAGAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695_MULTIEX2-10/41=C1-27
Average complexity
C3
Mappability confidence:
86%=100=88%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.693 A=0.000 C2=0.930
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.5=100)
A:
PF0006316=Myosin_head=FE(5.0=100)
C2:
PF0157614=Myosin_tail_1=FE(4.9=100),PF059116=DUF869=PU(32.6=65.1),PF0003816=Filament=PU(2.0=14.0)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAAGGAGCAGGACACCA
R:
TGACAGCTCATTGATCAGGCG
Band lengths:
245-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]