HsaEX6021092 @ hg38
Exon Skipping
Gene
ENSG00000109063 | MYH3
Description
myosin heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:7573]
Coordinates
chr17:10637809-10638963:-
Coord C1 exon
chr17:10638873-10638963
Coord A exon
chr17:10638043-10638432
Coord C2 exon
chr17:10637809-10637935
Length
390 bp
Sequences
Splice sites
3' ss Seq
TGAACGGCTGCCCTCCACAGGCT
3' ss Score
7.53
5' ss Seq
AAGGTGCTG
5' ss Score
4.05
Exon sequences
Seq C1 exon
GAAAGATTTTGAATATTGTCAACTTCAAAGCAAAGTGGAAGATGAGCAGACACTGGGCCTCCAGTTTCAGAAGAAAATCAAAGAGTTGCAG
Seq A exon
GCTCGAATTGAGGAGCTGGAAGAGGAGATAGAGGCGGAGAGGGCCACCCGCGCGAAGACAGAGAAACAGCGCAGCGACTATGCCCGGGAGCTGGAGGAGCTGAGCGAGCGGCTGGAGGAGGCGGGAGGCGTCACCTCCACGCAGATAGAGCTCAACAAGAAGCGGGAGGCGGAGTTCCTGAAGCTGCGCAGGGACCTGGAGGAGGCCACACTGCAGCACGAAGCCATGGTGGCCGCGCTGAGGAAGAAGCATGCGGATAGTGTGGCCGAGCTTGGGGAGCAGATTGACAACCTGCAGCGGGTCAAGCAGAAGCTGGAGAAGGAGAAGAGCGAGTTCAAGCTGGAGATCGATGACCTCTCCAGCAGCATGGAGAGTGTGTCGAAATCTAAG
Seq C2 exon
GCAAATCTGGAAAAAATCTGCCGAACCCTGGAGGATCAGTTAAGTGAGGCCAGGGGCAAGAATGAGGAAATTCAGAGGAGCCTGAGCGAGCTGACCACACAGAAGTCTCGTTTGCAGACCGAGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109063-'32-28,'32-27,33-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.323 C2=0.628
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(10.9=100),PF0157614=Myosin_tail_1=FE(7.8=100)
A:
PF0003816=Filament=FE(46.7=100),PF0157614=Myosin_tail_1=FE(33.3=100),PF131661=AAA_13=PU(19.1=37.7)
C2:
PF0003816=Filament=FE(15.2=100),PF0157614=Myosin_tail_1=FE(10.9=100),PF131661=AAA_13=FE(16.4=100),PF059116=DUF869=PU(40.2=90.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAATATTGTCAACTTCAAAGCAAA
R:
CTCGGTCTGCAAACGAGACTT
Band lengths:
206-596
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains