HsaEX6023354 @ hg19
Exon Skipping
Gene
ENSG00000120093 | HOXB3
Description
homeobox B3 [Source:HGNC Symbol;Acc:5114]
Coordinates
chr17:46651199-46656719:-
Coord C1 exon
chr17:46656656-46656719
Coord A exon
chr17:46655769-46655825
Coord C2 exon
chr17:46651199-46651376
Length
57 bp
Sequences
Splice sites
3' ss Seq
TCCTTATCCGGGAATCGCAGGCG
3' ss Score
1.88
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
CAAAGGGATGTGAGATTTCTATTCGCCGCGGAGGCGGCGACAATTAGAACGTCTCGGACCCATG
Seq A exon
GCGGGGCGGCCATTGGCTCGGAGGATCACGTGGGCGCCTAACTTTGTTCACTTGACA
Seq C2 exon
CAAATCTCCTTGGACCGGCTGTTGGGGGAAAAAAGTGTTAGCCGTCTCTCCCGGATCTGCAAGGGGGAAAAAATTTGGAACCATAAAGTTGAAAACTTTTTTCTCTCAGTTTGGAAGAAGCCCTTCGTCATGAATGGGATCTGCAGAGTTCGGGCGAGAGGAGGCGAGAGGCGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120093-'2-8,'2-2,3-8=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGAACGTCTCGGACCCATG
R:
CGAAGGGCTTCTTCCAAACTGA
Band lengths:
148-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)