HsaEX6023354 @ hg38
Exon Skipping
Gene
ENSG00000120093 | HOXB3
Description
homeobox B3 [Source:HGNC Symbol;Acc:HGNC:5114]
Coordinates
chr17:48573837-48590241:-
Coord C1 exon
chr17:48590125-48590241
Coord A exon
chr17:48578407-48578463
Coord C2 exon
chr17:48573837-48574014
Length
57 bp
Sequences
Splice sites
3' ss Seq
TCCTTATCCGGGAATCGCAGGCG
3' ss Score
1.88
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GACACTTTAACTGCTCGCTGTGGTGGGGAAGGGGGCAGAGGTAGGTGAGCACTCTCCCAGCCTGGAGCAGCCGGACCAGCCCAGAAGGCAGCGGCGGCCCAGGCCAGCATTCCCGCA
Seq A exon
GCGGGGCGGCCATTGGCTCGGAGGATCACGTGGGCGCCTAACTTTGTTCACTTGACA
Seq C2 exon
CAAATCTCCTTGGACCGGCTGTTGGGGGAAAAAAGTGTTAGCCGTCTCTCCCGGATCTGCAAGGGGGAAAAAATTTGGAACCATAAAGTTGAAAACTTTTTTCTCTCAGTTTGGAAGAAGCCCTTCGTCATGAATGGGATCTGCAGAGTTCGGGCGAGAGGAGGCGAGAGGCGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120093-'1-18,'1-11,4-18=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.074
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTAACTGCTCGCTGTGGTGG
R:
CAGCCGGTCCAAGGAGATTTG
Band lengths:
133-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains