HsaEX6025990 @ hg19
Exon Skipping
Gene
ENSG00000159496 | RGL4
Description
ral guanine nucleotide dissociation stimulator-like 4 [Source:HGNC Symbol;Acc:31911]
Coordinates
chr22:24040399-24041363:+
Coord C1 exon
chr22:24040399-24040520
Coord A exon
chr22:24040602-24040735
Coord C2 exon
chr22:24041031-24041363
Length
134 bp
Sequences
Splice sites
3' ss Seq
GGTCTGGCTCTGTCGCCCAGGCT
3' ss Score
3.15
5' ss Seq
CTGGTACAG
5' ss Score
3.91
Exon sequences
Seq C1 exon
GAGGTCCGAGTTCTGCAGGAAATGCAGCTGCTCCAAGTGGCTGCCATGAATTACAGGCTTCGGCCTCTTGAGAAATTTGTCACCTATTTCACAAGAATGGAGCAGCTCAGTGACAAAGAGAG
Seq A exon
GCTGCACTGCAGTGTCACCATCTCTGTTCACTGCAACGTCTGCCTTCTGGGCTCAAGTCCTTCCTCAGCCTCCCAAGCAGCTGGGACTACCGCTGTACACCACCATGTCCGGTTGTTCTGCTGTTGTTGTTCTG
Seq C2 exon
CTACAAGCTGTCCTGCCAGCTGGAGCCCGAAAACCCGTAGGCTGGCAACATCCTGCAGTGGCTGGGAACCCACCGGGATGCTGGCCAGAACACCGGCTCTGCACCATCCCTCACCCAGACCGTAGACACCAGGGAACCACATCTAGGAGGCTGGCAGCTCAGCTGCATCTTGCCCTGGATCCTCATCACCAACTGCTCCTGCTGGCCAGGATCAGGCCATGGGACTTTTGTGAGTCAGGCGGGAGACCATTTTATGTTTATTTTCTTTAGTGTATAAGTAAGGGTTTTTTCTTAACTTTCGTTAAAATAAAATTTTAAAAAACTATTCAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159496-'14-18,'14-16,16-18=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.065 C2=0.503
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PD(1.0=4.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAAGTGGCTGCCATGAAT
R:
GCCTCCTAGATGTGGTTCCCT
Band lengths:
243-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)