HsaINT0139899 @ hg19
Intron Retention
Gene
ENSG00000159496 | RGL4
Description
ral guanine nucleotide dissociation stimulator-like 4 [Source:HGNC Symbol;Acc:31911]
Coordinates
chr22:24040399-24041363:+
Coord C1 exon
chr22:24040399-24040520
Coord A exon
chr22:24040521-24041030
Coord C2 exon
chr22:24041031-24041363
Length
510 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GCTGCTTCTCTGTCCTGCAGCTA
3' ss Score
9.66
Exon sequences
Seq C1 exon
GAGGTCCGAGTTCTGCAGGAAATGCAGCTGCTCCAAGTGGCTGCCATGAATTACAGGCTTCGGCCTCTTGAGAAATTTGTCACCTATTTCACAAGAATGGAGCAGCTCAGTGACAAAGAGAG
Seq A exon
GTGAGGGCCTAGCCCATGGGCTGAGGGTGGGAGAAGGCTCTCCATTTTTTTTTTTTAACATGGTCTGGCTCTGTCGCCCAGGCTGCACTGCAGTGTCACCATCTCTGTTCACTGCAACGTCTGCCTTCTGGGCTCAAGTCCTTCCTCAGCCTCCCAAGCAGCTGGGACTACCGCTGTACACCACCATGTCCGGTTGTTCTGCTGTTGTTGTTCTGGTACAGATGGGGTTTCACGATGATGTCCAGGATCGTCTCAAACTCCTGGCCTCAAGCAATCCACCCACCTCAGCCTCCCAAAGTACTGACGTTACAGGTGTGAGCCACCCCACCTGGCCTAGAGGAGGCTCTCCCGTGGCCAGCTGCAGAGAGCCTATGGCCATGCCTCCACGGCCAGCATCAAGCCCTGTTGCATGGGGACCACTGGGGACCCAGGATTCCAGCTGGGCAGGCACTGACAGGGGACCTGATGTGTGGCTCATGGTGGCCTCACAGCTGCTTCTCTGTCCTGCAG
Seq C2 exon
CTACAAGCTGTCCTGCCAGCTGGAGCCCGAAAACCCGTAGGCTGGCAACATCCTGCAGTGGCTGGGAACCCACCGGGATGCTGGCCAGAACACCGGCTCTGCACCATCCCTCACCCAGACCGTAGACACCAGGGAACCACATCTAGGAGGCTGGCAGCTCAGCTGCATCTTGCCCTGGATCCTCATCACCAACTGCTCCTGCTGGCCAGGATCAGGCCATGGGACTTTTGTGAGTCAGGCGGGAGACCATTTTATGTTTATTTTCTTTAGTGTATAAGTAAGGGTTTTTTCTTAACTTTCGTTAAAATAAAATTTTAAAAAACTATTCAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159496-RGL4:NM_153615:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.503
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PD(1.0=4.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAATGCAGCTGCTCCAAG
R:
CTCCCGCCTGACTCACAAAAG
Band lengths:
351-861
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)