HsaINT0139899 @ hg38
Intron Retention
Gene
ENSG00000159496 | RGL4
Description
ral guanine nucleotide dissociation stimulator like 4 [Source:HGNC Symbol;Acc:HGNC:31911]
Coordinates
chr22:23698212-23699176:+
Coord C1 exon
chr22:23698212-23698333
Coord A exon
chr22:23698334-23698554
Coord C2 exon
chr22:23698555-23699176
Length
221 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CTGTTGTTGTTCTGGTACAGATG
3' ss Score
8.93
Exon sequences
Seq C1 exon
GAGGTCCGAGTTCTGCAGGAAATGCAGCTGCTCCAAGTGGCTGCCATGAATTACAGGCTTCGGCCTCTTGAGAAATTTGTCACCTATTTCACAAGAATGGAGCAGCTCAGTGACAAAGAGAG
Seq A exon
GTGAGGGCCTAGCCCATGGGCTGAGGGTGGGAGAAGGCTCTCCATTTTTTTTTTTTAACATGGTCTGGCTCTGTCGCCCAGGCTGCACTGCAGTGTCACCATCTCTGTTCACTGCAACGTCTGCCTTCTGGGCTCAAGTCCTTCCTCAGCCTCCCAAGCAGCTGGGACTACCGCTGTACACCACCATGTCCGGTTGTTCTGCTGTTGTTGTTCTGGTACAG
Seq C2 exon
ATGGGGTTTCACGATGATGTCCAGGATCGTCTCAAACTCCTGGCCTCAAGCAATCCACCCACCTCAGCCTCCCAAAGTACTGACGTTACAGGTGTGAGCCACCCCACCTGGCCTAGAGGAGGCTCTCCCGTGGCCAGCTGCAGAGAGCCTATGGCCATGCCTCCACGGCCAGCATCAAGCCCTGTTGCATGGGGACCACTGGGGACCCAGGATTCCAGCTGGGCAGGCACTGACAGGGGACCTGATGTGTGGCTCATGGTGGCCTCACAGCTGCTTCTCTGTCCTGCAGCTACAAGCTGTCCTGCCAGCTGGAGCCCGAAAACCCGTAGGCTGGCAACATCCTGCAGTGGCTGGGAACCCACCGGGATGCTGGCCAGAACACCGGCTCTGCACCATCCCTCACCCAGACCGTAGACACCAGGGAACCACATCTAGGAGGCTGGCAGCTCAGCTGCATCTTGCCCTGGATCCTCATCACCAACTGCTCCTGCTGGCCAGGATCAGGCCATGGGACTTTTGTGAGTCAGGCGGGAGACCATTTTATGTTTATTTTCTTTAGTGTATAAGTAAGGGTTTTTTCTTAACTTTCGTTAAAATAAAATTTTAAAAAACTATTCAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159496:ENST00000441897:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.480
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PD(1.0=4.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCAGCTCAGTGACAAAG
R:
GACAGAGAAGCAGCTGTGAGG
Band lengths:
308-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development