GgaINT0125406 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:7451481-7451777:-
Coord C1 exon
chr17:7451656-7451777
Coord A exon
chr17:7451577-7451655
Coord C2 exon
chr17:7451481-7451576
Length
79 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
AACCTTTGTCTCTCCCCCAGCTA
3' ss Score
8.4
Exon sequences
Seq C1 exon
GAGTTTGAAGTCATTGCCCAGATCAAGCTGCTTCAGTCAGCCTGCAACAACTACAGCTTCACCCAGGAGGACCATTTTGTGGACTGGTTCCACAGTCTGGAGAGGCTCAGTGAGGCCGAGAG
Seq A exon
GTGAGTGCAAGCATGGCCGTGCTGCTGCTGGTGCGTTGGGAAGCTGCAGAGAATGCTGAAACCTTTGTCTCTCCCCCAG
Seq C2 exon
CTATGGGCTGTCATGCGAGATTGAGCCACTGTCTGAGTCAGCCAGCAACACGCTGAAGGCGAAGAAGAACACGGGAATCATCAAGCGGTGGAGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003412:ENSGALT00000005397:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.030
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAGCTGCTTCAGTCAGCC
R:
ATTCCCGTGTTCTTCTTCGCC
Band lengths:
179-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]