DreINT0126445 @ danRer10
Intron Retention
Gene
ENSDARG00000071213 | rgl3a
Description
ral guanine nucleotide dissociation stimulator-like 3a [Source:ZFIN;Acc:ZDB-GENE-101130-1]
Coordinates
chr6:7979343-7980535:-
Coord C1 exon
chr6:7980414-7980535
Coord A exon
chr6:7979439-7980413
Coord C2 exon
chr6:7979343-7979438
Length
975 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
AAGTGCTTCTCTCTCACAAGCTA
3' ss Score
3.06
Exon sequences
Seq C1 exon
GAGTTTGAGATTCTGTCTCTAATCAGGCAGCTGCAGGCGTCATGTGCTCACTACACTCTCCAATCACATCCTCGCATCATTTCCTGGATCAACAGCAGCATGAGTCTTTCTGATCAGAAGAG
Seq A exon
GTGAGACATTTAAATGCACATGCCTTACACATGACATAACAAAGCAAACATTAGAAAATCTTATTTGGAAGATATTTGAGCTCTACTGATGTCAGAAATGTATGCATCCAGTGTGCAAGAGTTGGGAAAATTACTTCATAAAAGTAATTCGTTTCTAATTGCATCATTCATTCGTTCATTTTCTTTTCGGCTTAGTCCCTTCATCAATCTGTGGTCGCCACAGCGGAATGAACCGCCAACTTATCCAGCATATGTTTTACACAGCGGATGCTCTTCCAGCTGCAACTTCACAGGGAAATCTGACTGCATCATTAAAACTTTATTTCAAATTTCAATTAGAGCTGTGGCGATGGCAATTTTACCCGCTCGGATCACCACCATAACAAGGGCGGTTGTTGGTGACTTACCACCGCGGGAGTAGAAAATTGCCACTGTCACACCTTTACTTCAAAGTAGGGCTGCTCGATTATGGGAAAAATCATAATCATGATTATTTTGCTGTAATAATTGTAATTATTGTATTAACGATTAACAAATAATTGTAATAACGATTATTGAAAACGATATACAGTTGAAGTCAAAATTATTTGCCCTTGAGTGAATTTCTTTTTATAAATATTTCCCAAACGATGCTTAACAGAGCAAGGAGTTTTTCGCAGTATTTTATATAATATTTTTTTCGTCTGGGGAAAGGCTTATTTGTCTTATTTTGGCTAGAATAAAAGCAGGTTTAAATATTTTGAAACCATTTTTAAGATCAATAATATTAGCCCCCTTAAGCAATATATAGTTTTGATTGTCTGCAGAAGAAACTACTGTTATACAATGACTTGCCTAATTTTAAACAGAAATTGAGGGGAAAAGGGTCGCTAATAATATTAGCTACTAGTTACTTTGTGACTAATTGCAACACTGACAGATGAATAAGCCTCTCAGATATTTCAGTAGTAACTGTAAGTGCTTCTCTCTCACAAG
Seq C2 exon
CTATGAGTTGTCAAGAGAGCTGGAGCCCCCAGTTGACCCCTGTCCCAGCTCTCCAAACTCCTGGAGTCACAGGCTCATCGCCAAGAAACTGAATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071213:ENSDART00000151358:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.576
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCTCTAATCAGGCAGCTGC
R:
AAATTCAGTTTCTTGGCGATGAG
Band lengths:
206-1181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]