MmuINT0134182 @ mm10
Intron Retention
Gene
ENSMUSG00000040146 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:MGI Symbol;Acc:MGI:1918996]
Coordinates
chr9:21975950-21976860:-
Coord C1 exon
chr9:21976739-21976860
Coord A exon
chr9:21976046-21976738
Coord C2 exon
chr9:21975950-21976045
Length
693 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACC
5' ss Score
6.78
3' ss Seq
TGCTTCCTGAACCTCTCTAGCTA
3' ss Score
4.88
Exon sequences
Seq C1 exon
GAGTGGGAGATCCTGGCCCGAATCCAGCAGCTACAGCAACGCTGCCAGCGCTACAGCCTGAGCCCCCGCCCGCCAATCCTGGCTGCACTTCGAGCCCAGCGCCAGCTCAGCGAGGAGCAAAG
Seq A exon
GTGACCACTGAAACAAGTCCACGTCACTCATTCAACCCACCCTGCCTTCCCTTCCAGAAATATTCCAGGCCCCATCTTGAAGGCAACTCCACCCCAGGACCTTTCTTTTCTCCCGCCCGAAGGCCATCACCCTCCTCCAACCCTAATCCTGACCCACCCTACACTCCGGTTTTAGCCCTTACTGTTCACTTTGCCACTCAGCTTGACTGTCCCAACTGTTCTGATCTTGTTATCCAAATCTGCAGCCTTGATCACTCAGTCCTAGTCTGAGGAACTCTCTCGCTGTCCAACTCAGTCAGCCCGTTGCTTCCACTCACGTCCAGTTGATCCCCCGAATTACCTTACCCTGAACTTTAGAGCTGGCCTGGTTCTGCTCTGGAATCTCTGCTTTATTTATCACTTTCAGTGCCACACACATGCCGGGTGTGACCCCTATGCCACAGCCACAGCCCACTGGGGGACTCTAGCCAAGCACTCTATGTATGAGCCACACCCCTAACTAATCTCACCTGTGAATGTTTTGCACCCCACTAACCAAACAGTTCACCGCATCTGTAATGCACCCTGATACCCCAGTGATTCCCATTTCTAACCTGACTTTGACCCAGGGCTCTAACCCCTCTCCTCCTCACCCCAGAAGTGGTTCACATCTCATTCTAACCGTTACCTCCTCTGCTTCCTGAACCTCTCTAG
Seq C2 exon
CTACCGAGTCTCCCGTGTTATTGAGCCACCAGCTGCCTCCTGTCCCAGCTCCCCTCGTATCCGGCGACGCATCAGCCTCACAAAGCGTCTCAGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040146:ENSMUST00000045726:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.496 A=NA C2=0.970
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGATCCTGGCCCGAATC
R:
GCACTGAGACGCTTTGTGAGG
Band lengths:
214-907
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types