HsaINT0139885 @ hg19
Intron Retention
Gene
ENSG00000205517 | RGL3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:HGNC Symbol;Acc:30282]
Coordinates
chr19:11510878-11512808:-
Coord C1 exon
chr19:11512687-11512808
Coord A exon
chr19:11510974-11512686
Coord C2 exon
chr19:11510878-11510973
Length
1713 bp
Sequences
Splice sites
5' ss Seq
GAGGTGACC
5' ss Score
5.57
3' ss Seq
TCCACATATTGACCCCTCAGCTA
3' ss Score
4.83
Exon sequences
Seq C1 exon
GAGTGGGAGATCCTGGCCCGCATCCAGCAGCTGCAGAGGCGCTGTCAGAGCTACACCCTGAGCCCCCACCCGCCCATCCTGGCTGCCCTGCATGCCCAGAACCAGCTCACCGAGGAGCAGAG
Seq A exon
GTGACCACCCTGTAGCCTGTCCCAGCCCCACCCCAGCTGAGCCTGGGTCACCAACTGGATTCCACCCACTCCATACACACCTCCAGCTCCTCCCAAGACCCCCTCTTGAGCCCTGATCCCCCACTACAACCTGTGACCTTGCAGTATCTCCAGTCGAATCAAATAGACTGGGCCTGGTGGTTTACTCGTGTAATCCCAGCACTTGGGAGGCCAAGGTGGGTGGATCACTTGAGCCCAGGATTTCGAGACCAGCCTGGGCAACATGGCGAAACCCCATATCTACAAAAAAATACAAAAATTAGCTGAACGTGGCTGGGCACGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGAATCACATGAGGTAAGGAGTTTGAGACCAGCCTGGCTAACAGAGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCAGGTGTAGTGGCAGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCAGAGCTTGCAGGGAGCCGAGATGGTGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAATTAGCTGAATGTGGTGTTGAGTGCCGTTGGTCCCAACTACTTGGGAGGCTGAGGTGGGAGGATTGCTGGAGCCTGGGAGGCAGAGGTTGGAGTGAGCCAAAATCACGCCACTGCAGTTCCAGTCTAGGTGACAGAGTGAGACCCTGTCTCAAAAAAAAAAAAAAAAAAATAGTCACAATTGACCTCTGACCTCAATTTCAACCCCATCTGATTTTCTGACCTCAACTTTAGCATTCAGCTGGCCATTCAACTCAACTGTCCCATCTGTTGACTTCCCCATCTTTGGTCCTATCTGACCCATGACCTTATTCATGACCCCTCATCTGACTCTCTGACCCCAACCCTTGACCCTCAGTTCTGAGTAACTGACTCCAACTTTTATGTTTGACTGTCCAGCTTGACTATGACAACTGTGTCCTTTCTTTCTATATAACTGTGACCCTAACCATTGACCCCAATGGTGACCTGACCCCAGTCTGACCCTGACTTTATTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTTGAGACAGAGTCTGGCTCTGTTTCCCAGGCTGGAGTGCAGTGGAGTGATCTCGGCTCACTGTAGCCCCCGCCTCCCAGGTTCAAGCAATTCTACTGCCTCAGCCTCCCCGGTAGCCGCAATTACAGGCGCGAGCTACCACACCTGGCTAATTTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACTATATTGGCCAGGCTGGTTTCGAACTCTTGACCCGAAGCAATCCTCTCGCCTCAGCCTCCCAAAGTGCTAGGATTACAGGCGTGAGCCACTGCACCCAGTCCTGACCCTGACTTTAATCCTGACCCAATTTGATTCCTTAGTGCCACCCTGTGAATCTCTTTGTGACCTCCTGACCAGCCATCCTGTCCCATCTCTGATAAGACCTTGATGCTCAATGACCCTCATTTACCACCCTGACCCTGGCATGTGGGGTGCCACCTCTGGCTGCTCCCCCTTACACCCCAAACCCACCTCCCAACTGATTCCAACTCTTATCTCTCCATCCCCTGTATTTCCTGCCCCCACCACCTCATCCACATATTGACCCCTCAG
Seq C2 exon
CTACCGGCTCTCCCGGGTCATTGAGCCACCAGCTGCCTCCTGCCCCAGCTCCCCACGCATCCGACGGCGGATCAGCCTCACCAAGCGTCTCAGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205517-RGL3:NM_001161616:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.610 A=NA C2=0.886
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGGAGATCCTGGCCC
R:
GCACTGAGACGCTTGGTGAG
Band lengths:
218-1931
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)