BtaINT0124458 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008198 | RGL3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:HGNC Symbol;Acc:HGNC:30282]
Coordinates
chr7:17012179-17013482:-
Coord C1 exon
chr7:17013361-17013482
Coord A exon
chr7:17012275-17013360
Coord C2 exon
chr7:17012179-17012274
Length
1086 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACA
5' ss Score
8.1
3' ss Seq
TCTACTTCTTGACCCTTCAGCTA
3' ss Score
7.37
Exon sequences
Seq C1 exon
GAGTGGGAGATCCTGGCCCGCATCCAGCAGCTGCAGAGACGCTGTCAGAGCTACTGCCTGAGCCCCCACCCGCCCATCCTGGCCGCCCTGCGTGCCCAGCACAAGCTCAGCGAGGAGCAGAG
Seq A exon
GTAACAACTTGTGGCCTGCCCTGACAGCACCCCTCCAACCCTGCCACTGATCCTGGGTGACACCCCGGATCTGCACACCCCATGCACCTCCCCAGCTCCTCCTCAGATCCCCTCCTGAGCCTTCACCTCACCCCCCTGCCAGCCTGTCACCTGACATTGTCTCCAGCCCAGCCGAGGGCCCCAGTTGCCCTCTGACCCCAAACTTCGACCTCATCTGACTTTCTTTTCTTTCTTTTTTAAAAAGTCATTTTCTTTATTTTTGGCTGTGCTGGATGGTCATGGCTGCTTGGGCTTTTCTGTAGTTGCAGTGAGTGTGGTTACTCTTTCTGGCGCACCGAGTTCTCATTGTACTGGCTTCTTTTGCTGTGGAGCATGGGCTCTAGGCACACGGGCTTCAGTAGTTGTGGCTCCTGGACTAGAGCACAGGGTCAGTAGTTGTGATGCCTGGGCTTAGTTGTTCCATAGCCTGTGGGATCTTCCCAGACCAAGGATGGAACCAGTGTCTCCTGCATTGGCAGGCAGATTCTTTACCACTGAGCCATTAGGGAAGCCCTTGTCTGACTTTTGGACTTCAGCGTTTAATGTGTAGCCAGCTGTTCCACTCAACCATCCTATCTTTTCTCTTCCCCACCTCTGGCCCCATCTGACCCGTGACCCACCTCTGACTCTCTGAGGCCAACCACTGACCCCCAGTTCTGAGCAACTGACTCCAACTTTGACATATATCTGACTTATGACCCCCAGGCAGTTGACCCCAATTCAACTGTACCAACTCATCTGATTGAATCCATGACCCTAATCATTGACCCCAGTGATTATCTGACCTTGAACTCTATCCTTGACCCAATTTGACTCCTCAGTCCCACTCTGTGAATCCCTGTGTGTCCTGCTAACCAAGCCATCTCATCTAATCACTGATAAGACCCTGAAACTGTAATATCCACATTTATTACCCTGATCTTGACATTGGGTGCCTAATTCCTGTCTGTACCCTCCCTCTACCCACACACACACCCAAAACCCAGCTCCTAACTGAATCTAATTCATTTGTCAACCCACCCATCCATCTACTTCTTGACCCTTCAG
Seq C2 exon
CTACCGCATCTCCCGGGTCATTGAGCCACCAGCCTCCTCCTGCCCCAGCTCCCCATGCATCCGACGGCAAATCAGCCTGACCAAGCGCCTCAGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008198:ENSBTAT00000010783:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.195 A=NA C2=0.364
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGGAGATCCTGGCCC
R:
CACTGAGGCGCTTGGTCAG
Band lengths:
217-1303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]