RnoINT0126476 @ rn6
Intron Retention
Gene
ENSRNOG00000013027 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:RGD Symbol;Acc:1309756]
Coordinates
chr8:22987461-22988889:-
Coord C1 exon
chr8:22988351-22988889
Coord A exon
chr8:22987557-22988350
Coord C2 exon
chr8:22987461-22987556
Length
794 bp
Sequences
Splice sites
5' ss Seq
GAGGTGACC
5' ss Score
5.57
3' ss Seq
CACATGCTAAACCTCTCTAGCTA
3' ss Score
3.23
Exon sequences
Seq C1 exon
AAACTGCCCCCAGGTCCTGTCCCCTACCTTGGCACCTTTCTCACAGACTTGGTTATGCTGGATACAGCCTTACCAGATATGTTGAAGGTTTGACCTCCTACCCTTGACTCTTGACCCCTGCTCTATTACCCACAGCCCAACAGTCCTTCATTCATTCAGCTTTGATCTAGCTTGAACTCATACTTCCCTCCACCCCCACATACCATAGAGGCTTGTGCCATCATAGCTCTTGAACTTGACTTTTGACCCTTGACCCTTGACCCTGGATGCTATAGCTCAAGCCAGCTTTGCCCCCTCAGGGAAATCTCATCAACTTTGAAAAGAGGAGGAAGGTAAGTGGGTGGGTAGTGGGGGTTGGTGAGATGCCCCACGGGTGGCAGGCAGGTTGTGACAGGTTCTCAGGAGACACCCCCTCAGGAGTGGGAGATCCTGGCCCGAATCCAGCAGCTACAGCATCGATGCCAGCACTACAGCCTGAGCCCCCGCCCGCCAATCCTGGCTGCCCTTCGTGCCCAGCGCCAGCTCAGCGAGGAGCAGAG
Seq A exon
GTGACCACCCAACCAAGTCCACCTCATACATTCACCCCACCCTCCTTCCCCTCCAGAAATGTTCCAGACCCCATCCTGAAGACAGGGGTCTGCTACCCGAAGGCCATCACCCTCCTCCAACCCAAAATCCGCCCCATCCTACACTCTGGTTTTAGCCCTTAATGTTCGGTTAGCCATTCAGCTCAATTGTCCCAACTGTTCTGATCCTGTCATCCAAGTCTGCGGCCTTGATCACTAAGTCCTAGTCTGAGGATCTGACACTAGCTTTAGCGCTCTCTCGGCATCCAACTCAGCCAGCCTGTCACTTCCGCCCACCCACTCTTCCAGCCCATGACCTTTACGGTTGGTCCTCTGAATTACCTGGCCCTGAACTTTAGAGTTGGCCCAGATCTCTCTGGACTGTCTGCTTTGTTTAGCTCTTACAGTGTCACACACATGCTAGGTCTGTGCTACACCTCTAAGCCATGGCCCCAGCCATTTACTGGGGCACTCTAGGCAGGGGCTACACCTCTAAGCCATGGCCACAGCTCCTCACTAGAGGACTCTAGCCAAGCACCGTATGTATGAGCTTCACCCCTAGCTAATCTCACCCTGTGAGTGCTGTGCACCCCACTAACTAAACAGTTCACCTCATCTGTAACGAACCCTGATACCCCAGTGATTCCCATTTGTATCCTGACCTTGACCTGGGCTCTAACCCCTCTTCCCTCCCCACCCCCAACATGGTTCACAACTCATTCTGTTAGCTCTTCTGCTTCCTGCTCCAACACCCCTCACATGCTAAACCTCTCTAG
Seq C2 exon
CTACCGAGTCTCCCGTGTTATTGAGCCACCAGCTGCCTCCTGTCCCAGCTCCCCTCGTATCCGGCGACGCATCAGCCTGACAAAGCGTCTCAGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013027:ENSRNOT00000017493:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PD(14.4=93.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCTTGACCCTGGATGCTA
R:
GATACGAGGGGAGCTGGGAC
Band lengths:
349-1143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]