HsaINT0137002 @ hg38
Intron Retention
Gene
ENSG00000160271 | RALGDS
Description
ral guanine nucleotide dissociation stimulator [Source:HGNC Symbol;Acc:HGNC:9842]
Coordinates
chr9:133102476-133102900:-
Coord C1 exon
chr9:133102779-133102900
Coord A exon
chr9:133102572-133102778
Coord C2 exon
chr9:133102476-133102571
Length
207 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CACTGCCCCTCTGCTCATAGCTA
3' ss Score
7.26
Exon sequences
Seq C1 exon
GAGTTCGAGGTGATCGCCCAGATCAAGCTGCTGCAGTCGGCCTGCAACAACTACAGCATCGCGCCAGATGAGCAATTTGGGGCCTGGTTCCGGGCCGTGGAGCGGCTCAGCGAGACTGAGAG
Seq A exon
GTGAGGCCGGGGCAGCAAATGGGGACAGTGGGGGCAGGCTGTCCTAGGGGGCCAGCTCCAGAGGGCCAGCAGCTATGACCCATGGTCAGCCTCAGCCCCTGTTGCCTGAGGATGGCCGGGGCACCCCGACTCCAGCTTCTGGGCAGGTGCTGGGGGAAGGCCGGAGCATGGCCCCTGGTTGTCACACCACTGCCCCTCTGCTCATAG
Seq C2 exon
CTACAACCTGTCGTGCGAGCTGGAGCCCCCATCCGAGTCAGCCAGCAACACCCTCAGGACCAAGAAGAACACAGCCATTGTCAAGCGCTGGAGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160271:ENST00000372050:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.364
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGCCCAGATCAAGCTGCT
R:
GCTCCAGCGCTTGACAATGG
Band lengths:
204-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development