BtaINT0122014 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004194 | RALGDS
Description
Bos taurus ral guanine nucleotide dissociation stimulator (RALGDS), mRNA. [Source:RefSeq mRNA;Acc:NM_001101978]
Coordinates
chr11:103130718-103131122:-
Coord C1 exon
chr11:103131001-103131122
Coord A exon
chr11:103130814-103131000
Coord C2 exon
chr11:103130718-103130813
Length
187 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GGCCCTGCTCTGTCCTGAAGCTA
3' ss Score
5.53
Exon sequences
Seq C1 exon
GAATTCGAAGTGATCGCCCAGATCAAGCTGCTCCAGTCAGCCTGCAACAATTACAGCATCACGCCCGAAGAGCACTTCGGGGCCTGGTTCCGGGCCATGGAGAGGCTCAGCGAGGCTGAGAG
Seq A exon
GTGAGTGCGGGCAGGGGCTCGCGGGGTGTGGGGGCACACCTGAGAAGCAGTGGGCTGGGGTCCTGGTCAGCCTCGGGCTCTGCCACTGGTGACGGCCGGGGCGCTGGACTCCGTCTGGCGGACAGGCTCAGGATCAGAGCCCCGAGTGTGGCTTCTGGTAGGCTCATGGCCCTGCTCTGTCCTGAAG
Seq C2 exon
CTACACATTGTCATGCGAGCTGGAGCCCCCCTCCGAGTCGGCCAGCAACACCCTCAAGGTGAAGAAGAACACGGCCATCGTCAAGCGCTGGAGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004194:ENSBTAT00000032653:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.212
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGATCAAGCTGCTCCAGT
R:
CGATGGCCGTGTTCTTCTTCA
Band lengths:
186-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development