MmuINT0131345 @ mm9
Intron Retention
Gene
ENSMUSG00000026821 | Ralgds
Description
ral guanine nucleotide dissociation stimulator [Source:MGI Symbol;Acc:MGI:107485]
Coordinates
chr2:28403904-28404285:+
Coord C1 exon
chr2:28403904-28404025
Coord A exon
chr2:28404026-28404189
Coord C2 exon
chr2:28404190-28404285
Length
164 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CACAGCCATGTCTACCTTAGCTA
3' ss Score
3.73
Exon sequences
Seq C1 exon
GAGTTCGAAGTCATTGCCCAGATCAAGTTGCTACAGTCAGCCTGCAACAACTACAGCATTGCTCCGGAAGAACACTTTGGAACATGGTTCCGAGCTATGGAGCGACTCAGTGAGGCTGAGAG
Seq A exon
GTGAGGATGCTGGCCGTGGGGGTGGGGTGGGGGTTGTGGGGGAGGGACATGATGTCATCACTGTTGCCTGGTGACAGCTGCGTATCCAGGCTCCAGCTTGGGGGCTACCCCGATTGGGAGCCCCAGCTTGGCTCCTGGTAGCCTCACAGCCATGTCTACCTTAG
Seq C2 exon
CTACACCCTGTCGTGTGAGCTGGAGCCCCCGTCTGAGTCGGCCAGCAACACCCTGAGGAGCAAGAAAAGCACAGCCATTGTCAAGCGCTGGAGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026821-Ralgds:NM_001145835:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.364
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCGAAGTCATTGCCCAGA
R:
AGCGCTTGACAATGGCTGTG
Band lengths:
210-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: