HsaEX6030795 @ hg38
Exon Skipping
Gene
ENSG00000186160 | CYP4Z1
Description
cytochrome P450 family 4 subfamily Z member 1 [Source:HGNC Symbol;Acc:HGNC:20583]
Coordinates
chr1:47080623-47084744:+
Coord C1 exon
chr1:47080623-47080667
Coord A exon
chr1:47082334-47082461
Coord C2 exon
chr1:47084620-47084744
Length
128 bp
Sequences
Splice sites
3' ss Seq
TGCCCCTCTCATTTCATAAGGTC
3' ss Score
7.35
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
ATCCCAAAAGTGCTGTTAGCCACAAAATCCTTGAATCCTGGGTTG
Seq A exon
GTCGAGGACTTGTGACCCTGGATGGTTCTAAATGGAAAAAGCACCGCCAGATTGTGAAACCTGGCTTCAACATCAGCATTCTGAAAATATTCATCACCATGATGTCTGAGAGTGTTCGGATGATGCTG
Seq C2 exon
AACAAATGGGAGGAACACATTGCCCAAAACTCACGTCTGGAGCTCTTTCAACATGTCTCCCTGATGACCCTGGACAGCATCATGAAGTGTGCCTTCAGCCACCAGGGCAGCATCCAGTTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186160-'3-4,'3-3,4-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(3.3=100)
A:
PF0006717=p450=FE(9.3=100)
C2:
PF0006717=p450=FE(9.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAAAAGTGCTGTTAGCCA
R:
CAACTGGATGCTGCCCTGG
Band lengths:
164-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains