HsaEX6034934 @ hg19
Exon Skipping
Gene
ENSG00000180999 | C1orf105
Description
chromosome 1 open reading frame 105 [Source:HGNC Symbol;Acc:29591]
Coordinates
chr1:172389874-172414298:+
Coord C1 exon
chr1:172389874-172390089
Coord A exon
chr1:172399432-172399475
Coord C2 exon
chr1:172414213-172414298
Length
44 bp
Sequences
Splice sites
3' ss Seq
TTATACCAATTGTTTTCTAGGCC
3' ss Score
9.03
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAAACTGTAAACTGGCCTGTTTACTTCGTCTCCTAACAAAAAACACTTTGGATTCAGGTTCTCCACAGCAGTCTTCCACTGGCCACAGTGAGGGGAGCTAGGTTTCCCCAGTCTCCAGCTAGAAAAACTCAGAACATCTAAAGATCTGAAAGATGGAAAAAAGAGAACTAAAGGTAGGAAAAAAATAAATGAAACTTCCAATTCTTTCCTTATGGG
Seq A exon
GCCTGAATCCTTGTGCCAGCAGCCCACAAAGAGGCATGCCACAG
Seq C2 exon
GCTTCTGTTCCAAAATTTGACAAGATTCCTTGGCTTAGTGAGGCCAGCCTTGTAAACAAGCCATTAGTGCTCAGCCTTCCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180999-'1-2,'1-0,2-2=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF150811=DUF4548=PU(11.4=65.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCAGTCTCCAGCTAGAAA
R:
AGCCAAGGAATCTTGTCAAATTTTGG
Band lengths:
147-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)