HsaEX6034934 @ hg38
Exon Skipping
Gene
ENSG00000180999 | C1orf105
Description
chromosome 1 open reading frame 105 [Source:HGNC Symbol;Acc:HGNC:29591]
Coordinates
chr1:172420688-172445158:+
Coord C1 exon
chr1:172420688-172420906
Coord A exon
chr1:172430292-172430335
Coord C2 exon
chr1:172445073-172445158
Length
44 bp
Sequences
Splice sites
3' ss Seq
TTATACCAATTGTTTTCTAGGCC
3' ss Score
9.03
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATGTAAATCACACAGATGTTGGTAGAGAAAAAGGCATACTGGTATTGAAACTGTAAACTGGCCTGTTTACTTCGTCTCCTAACAAAAAACACTTTGGATTCAGGTTCTCCACAGCAGTCTTCCACTGGCCACAGTGAGGGGAGCTAGGTTTCCCCAGTCTCCAGCTAGAAAAACTCAGAACATCTAAAGATCTGAAAGATGGAAAAAAGAGAACTAAAG
Seq A exon
GCCTGAATCCTTGTGCCAGCAGCCCACAAAGAGGCATGCCACAG
Seq C2 exon
GCTTCTGTTCCAAAATTTGACAAGATTCCTTGGCTTAGTGAGGCCAGCCTTGTAAACAAGCCATTAGTGCTCAGCCTTCCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180999_MULTIEX1-2/4=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.321 A=0.867 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF150811=DUF4548=PU(11.4=65.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAGGGGAGCTAGGTTTCC
R:
TGGCCTCACTAAGCCAAGGAA
Band lengths:
133-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains