HsaEX1028053 @ hg38
Exon Skipping
Gene
ENSG00000135845 | PIGC
Description
phosphatidylinositol glycan anchor biosynthesis class C [Source:HGNC Symbol;Acc:HGNC:8960]
Coordinates
chr1:172399819-172456500:-
Coord C1 exon
chr1:172456389-172456500
Coord A exon
chr1:172442752-172442830
Coord C2 exon
chr1:172399819-172399916
Length
79 bp
Sequences
Splice sites
3' ss Seq
CACAGTCTCTCTTTTTCTAGGAA
3' ss Score
10.45
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
CCCTTGCCTACCATTTTCATTTCTTGACATGTGGAGCACAGCTGTTGGTTTCTGAGCAGCATGGAGTCACACTGGTTCCTCCTGGCCTGAGGGGAAAGAGAGACAGAGAGAG
Seq A exon
GAACTTGGCTGTGTTGTCCTGCCTCAGAGACAAATTCATCTATTGTAGGCCTAGCCCCTGCCTTTGAAAACAAGGAAAG
Seq C2 exon
CAAAAAAAAAGAGCATGAGGAATTTGAAGACTGAGAGATGAGTTGTGTAGCACCAACATTTTCTTTCTGCCTGACCTTCATACCTGATGAATTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135845_MULTIEX1-1/6=C1-3
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
PF064326=GPI2=WD(100=90.9)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCACAGCTGTTGGTTTCT
R:
TCAGGTATGAAGGTCAGGCAGA
Band lengths:
167-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains