HsaINT0022019 @ hg38
Intron Retention
Gene
ENSG00000180999 | C1orf105
Description
chromosome 1 open reading frame 105 [Source:HGNC Symbol;Acc:HGNC:29591]
Coordinates
chr1:172445073-172448531:+
Coord C1 exon
chr1:172445073-172445158
Coord A exon
chr1:172445159-172448440
Coord C2 exon
chr1:172448441-172448531
Length
3282 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACC
5' ss Score
9.24
3' ss Seq
CTCTTGTTTTAATTACTTAGATA
3' ss Score
6.62
Exon sequences
Seq C1 exon
GCTTCTGTTCCAAAATTTGACAAGATTCCTTGGCTTAGTGAGGCCAGCCTTGTAAACAAGCCATTAGTGCTCAGCCTTCCCAGAAG
Seq A exon
GTAACCTCTCAGCCACCGAGGGCAAAAGTTTTACGAAACATCTCACAGAAGATGATTTCTTCTTAAGGGATGGGGACAATTATCAGAGGGCACATTTGATCCATTGAGAAACTCAAGTCAAGTGCTTTAAAAATAGAAATAATCCGGGTTTCTCAGAAAAAAATGATCACTGAGTATAGGCCTGGCTAGAGGAGATGAGATCTCAAAATTTTTCCCTCTCCACCACTACCACTCAACAGTATAAGATAATTTTTCCCCTAGACACTGTCTCTCAAAACACTTCCATCCTCTTTCTCACCCCACATTTTCTCCACTGCTGTAGTCTGAAATTTTCACATTTTTACCATCAAAAGTCTAGAACAGTAAGTTCCCATCTTTATAGAATAGTAACTCTGTATGTAACTTTGAGGCACCCTCCTACATTCCTGTTAGTCCTACTCCTTCCAAACAAACTACTATATGACACATAAATCTATTTTTCAAAATTGCAGGAATTACATATCTAGGGAGCATTTCAACTGTCTCTTGAAATAATTGGGTTACCGTGTCCCTTCTCCATTTTTGATGAAATGGTTCCTAAGTGTAGTGATAAACCCCACTCTGGGAAGGGGACATGGACAGAAGGGTAGGTGTGAGGTAGTGTTGGGGTGAATGAGAGAAACCAGAAAGAGGGCAGAGAGAAAGAGAAAGGGCAGGCATAGAGGCCATTCCAAAGGCACACGACAGACTAAAAAGGAATGACTCCTTGGCATTCGAAACAGCTCGTTAGAAAAGCCAGACTCCCCAAAAAGAGTTTCTCCTCCTGTTGATAACTACCATGTACCCTCCTGCCCATGGATAAGTGACTTCATAAGCAAATTCCCATCACTGTCTCCACATCCCCACTTTAGTAACATGTACCTTTGCTTTGTCTACTGTACATTAAAAAAAAATCTCATTCTCAGTAAATAGGTAGACGGTTTTAGTATTTTCAGAACAAAATTCACAAGTGCTTTCAAGTGCTCGTTATTCAGTTGTGTTATTTTTACATAATTTTGAATATAACGAAAGCAGATTATCAGAGGTTCAATAAACTCAAAGGCCTATTTAAGAAACAAAAGTACTAAGTGATAGAGTGCTTATTAAGAGTTGTTAACACTGCATGGATCAGCACGAGTAAGGACAGTCTAGCATATTTTAATTGAGGGTGGGACACAAACTCACAGGCCCATGACAGTCAGATGAGGGGCATAATGAGTAAAGCTGGCCAAACAGGACTGCAATGAATGGGAAATCACCTCCCCGCTTCAGCCCACCCCCACGCCAGCAGTGTTACCTGCAGGCATGTGAGTCCAGAGGCCAGATCCACTGGGTCTTCTAACAGTACTAGAAATCTGGATGTTTTATGTGAAATTGCTAGTGTTTGATCTAATAGGGTAATATCCCACCATCCCATACTACCCCCATGCCCATTAGACCTGCCCCAGCAGCGAAGAGCAAAGTATCCTTGTGCATGGCTCTCTTGCCCCCAGCTCCCTTGGTCTCTAATTACACAAGCCTTTGGCAGAGGGTGGAGATCAGGGAGAAGGGTAGGCCTAGAATACAACTGGGCATCGGCAGCACCTGTTCACTTTCATAGCCAGGTCCTGGAGGGTCAGAGCAGACAGTCTGTTGACAGCCAACTGGAAAGGGAGTGGGCAGTTTTTCCTCCAGCCAGCCAAACCTAAGCTAGGCACAAGGAGAAATTACCTTAGGCAGGCAGTGAAGCTCTACTCATCGCTATTCTGGGAGGATTGGGGTAGCAATCTTAATTCTTGTTTAGAAAAATGTAATATACCTACCTCACAACAAAGGTGACCGAACAGCACCTTTGAGGTGCCCTGAGCTCTCAGGAGGACAAGACGGGAATGAAAAGTCTTTTGAAAGGATGGTTTAAGTATCAAAAGATCTTAAGGATTAAAAGCTCCTCATGTGGGCCAAAGCTCCGGGTTCCAAGCTGTTTATTTTTGGCAAAGCCCCTTACTGAGACTTTGGGAGAAAGTTCTCAATGTGCCTTAAGCATTACATACCCTTGAGCAAAGAGTTCTAATGCAGAACAGTCTGAAAAAAGATAAAGGAACATTTAGCCAAATATGCTCAGAGTAATTCCAAGTGTGCGCAATGGAAACACACCTACAGGGTTGGAGGAGGTGAGGCTGGGCTGTAATAAGAAGTGCCTGTACTGACCCACTTCCTTCAAGGACTCTCTCAGGTAGGCCTGACAATTTCAAAGCCACACTCATCGTCAGTCTCCAAAGCCCTTCAAGTCACACTAAGGTCATGTTTATATAAGATTATTGTATGCTGAAGGAGTTCTAAACTGGCCTCCTGGTCTCTGCTGGTCAGCATTTGGGTGACAAGTCCAAGAGAGCCTATTCCCATATCAAAGACAAAGACCCCGAGGGCACTCATGTCAGACCCACCATCTCTGGTCTTACAGGGCCCAGGGAAGTGTGAGGAGAAATGAAGCAAGAAATGTCTCATGAGCATCAAACTCCTTTCACATGCCTTTGTTTTAAATAAACAATGGACAATGAAATCTTCCCTCATTAGAGAGGAGGTGTGTTCCCGGCAAAACTGCCAGCATTCTGAGTTTCTATTTCTTGGATGCCAGGGGCATGAATGGTGCAACACACACAGTTTATGATTATCAGGCCCCTGCAGGCCTTGGCCCCTTACACTGTAATGAAATGAACCACAGTGCCAAGTGAGACAGAGCGCAGGCAGGTCACCCTGTAAAAGGAACTGGTGTTCTTGCAACATCACTGCTTCAACTGCTAACTAGAAAGAAAAAATGTTCCAAAGGAAAAGAATGGGTGAAGGGAGAAGACATTCTGTGGGAGGAAACAGGTGGATTGTTTCAGGGTGCAAGGACACAAACTCCAAGAAGTCAGCCCAGGTACGAAAGGGGACAGGTGCAGGTTAAACATCAAAAACTTGAGTGCAGACCCTTTCAAAGAGGAAACCTGGGATTCATTTCGCTCATTACACATCTACTGTTGTGAACAATCTTTATCCTGCCTTGTTTGTACAGTGTCTGACAATCCAAAATTGGTTAGTGCAAAACAAAAGGGACAGAAAAGCCAAAGTGACATAGGAGGGCAAATCCATCTTTTGGGAGCTCCCCAATGGCCTGAGTGCTCCAGAACTGGAGTGGAAGATAGCTCCCTGTGGTGTCCCTTGTATTCTCTCAGAAACAACCAAGGGCCTGGCTCTTCAAACATGGGACTGCGGTTCTAACGTTCTCTTGTTTTAATTACTTAG
Seq C2 exon
ATATCCTCATACCTCTGCGACTTTTCTGACTTCATCCAAGAAGAATATGAATTTGCCAATTTTGTTTCAAGTTCCAGATGTTTTATCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180999:ENST00000367727:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.048
Domain overlap (PFAM):
C1:
PF150811=DUF4548=PU(11.4=65.5)
A:
NA
C2:
PF150811=DUF4548=FE(18.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development