RnoINT0121825 @ rn6
Intron Retention
Gene
ENSRNOG00000026523 | RGD1309106
Description
similar to hypothetical protein [Source:RGD Symbol;Acc:1309106]
Coordinates
chr13:79883043-79885697:-
Coord C1 exon
chr13:79885612-79885697
Coord A exon
chr13:79883128-79885611
Coord C2 exon
chr13:79883043-79883127
Length
2484 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
CCTTTGCATTGATTGCCTAGGTA
3' ss Score
6.55
Exon sequences
Seq C1 exon
ACTTTTGTTCCAAAATTTGACAAGATTCCTTGGCTTAGTGAGGCCAGCGTGGTAAACAAGCCGTTAATACTCAGCATCCCTAGAAG
Seq A exon
GTAATTTCCCAGCTTCCGAGGAGGAAATGTGTGAGAAGGAGCTCAGTGGCTGTGCTCTTAAAGGGGAGAGGCGCATGTGACCTGTTGAGAAACCAAGTTGAGTGCCCAAAAAAGAAGAAATTCCCTGGATTTCTCAGACTAAAGTTCTGCTGTGTAAGGCCTCGCTAGAATGAGAGCCTGCATGACCTTCGTCTCTGCGTGCATTATCACTCAAAACACATCCGCAGCTCACCTCCCCTGCTTTAGTTTCTAGTCTTCAAATTTTAGCTGTCAAAAGTCTAGACCTATAACATGCCATCTTCAGAGTGGCAGTTGCTGTATTTCACGTGGGGCCTCCTCAGGTTTCATGGGTCCCTCCCTCCTCACAAAGCCAACAGAGAAAATATTTCTGTTTTTGAAAACTGAGTGTTTATATGTAGGGGCATTTCAGCTTCCCCTTAAGATAATTGTGTTCTTCATTCAACACCCCCCTTAGTAATTCAATTGTCCCTGGGTGTGGTGATAAGACTTCTCTAGGGGAAAAGATAGGTTGTGAGATGATAGGGGGAAGTAAGGAATCAGGCAAGCCAGGAAGGTACAGAGACCATTCCACAGGCTTGTCATAGACTGGCAATGGTTGCTAGAAAAAGCACACTCTTGAAGAGTTTCTTTTCCTGTTGGTAATGGTCCTGCATCCTTAGGTCTGTGAGCAAATGACTACATAGGGATCTCCATACCTCAATAACACACGTTTGTCCTGTCTGCACTTTAAAACAGTTCTCAAAAAGCTGGTAGATGATTTTGTGTATTTTCAAAGCAAACATTTGAGTGCCTGTTGTTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCTGGCATGAGCAATAAACTCAGAGGTTTGCTTAGGAAGTAACAAAGTAATAAACCCATTAAGAGTTGATAGTACCTTAAGAATCATCGCGAGTAATGATAACTTAGCATCTTTTTAAATTCGGCTTAGGTCATAAGCTCACATGCTGGTGGCAGTCAGATGGAAGTCACACTGATAAGGTTAGTCAGAGGTAGCAGTGAATGGGAGAACTGACCAAAGATGACACTCCCTCTGCCTGAGTCACTGTTGCCTCAGGTGTCTGATTCCGGGGCCAAATATGCTCAGTCTTCTAATTAGAAATATGGAAATTTCAGGTGCTTGAGCTAACCACCAGCATCCCAGAGTACTCTCTGCCATTCGATGTGCCTCTGAGCCCAGGGCAGAGCATCCCCATGCATGTTCCTCCTGCCTCCATCTCCCTTGTTCTCTGTCCAACTTTGGTGAAAGGTAGCGGGTAGAGAGCAGAGTGGAGCTTGAGAAAGGCAGGCTTAGCGCTCAACTGGTCAGTCATGGTGCCTGTTCTTTCAGAGTCTAGATCAGGGTTGTCAGGGACACTGGTTTATCTGCAGCATCTGGAAAGGGATGCAGTAACACACACCACCACCACCACCACCACCACCACCACCACCACCACCACAGGAAGTAACGTGCAATTGCCTGTACGACGCTTCCAGAAAGAAGCACTCTCCAAGCTTGGCCCAACTGTGCTGAAACCATACCTGTTAGTGAGAGGTTAGAAGCAGGAATAAGTTAGCCTTCTTGCCTTTTCCGGTCGGTTTTGGGATAATAAATCTGAGGCAGCCCGTTCCCATAACAGAGAAGCTTGGAAAGGAATTCACATCAGACTATCTCCCCAGCTTCCTAGGCCCCAAGGAAGTGACAAGAGAATTGAAACAATAAATCCTTCATGAACACCACACTCCTTTCCCATGAACAATGAACAATGAAATCCCTTCTCACTAAAGCGGAGAGGTGTTCTTGGCAGAAGATCAGCATTCCATGTTTCCATCCCTTGGACAGCAGGGACATGCTCGAGTGTCTCACCGCCCCTACCCCGAGGCCTCAGCCCCTCATTCTTTAACTAAATGAACTTCAGTGGGAGGCTGGTTCTCCTGTGGAGACAACCGGGGGAAATGTTCCAGTGAAGTATGTTCTGTGTGGGAGGACAGAGGTGAGTTGTTTCAGTGTGCAAAGGCATAAAGTCTAGGAAATCCAGCCAGGCGCAAAAGGACGGGTTCTTGATCCATGTTAAACCATCAGGTGCTTTGAAGAAGAAACCCAAGGAGCACTTTCTTCTGTGCACTTGTGCGTTCAGGGGCGGCCCTTTCCCTTGACCGATCAGTACAGTATCTCATCCAGAACTCTCATTGGTTAGTTGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGGGACGAGAGAAGCCCAGGTGGCCTAAGAGGAACATCACCACAAGTCTGAGTGTGCAGGAGGGCTGGAGCAGGAGGCAGTTCGGGTGCCCCAAGCTTTCCCTGGAACAACTGGGGCCTGGCTCTCCCAGCCCAGGACTGCGATTCTAACTTCCCTTTGCATTGATTGCCTAG
Seq C2 exon
GTACCGCTCCTCCATTGTTCTGACTTCATACAAGAAGGATATGTATTTGCCACACTTGCTTGAAGATTCAGACTTCATATCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026523:ENSRNOT00000035815:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF150811=DUF4548=PU(11.5=65.5)
A:
NA
C2:
PF150811=DUF4548=FE(17.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]