HsaEX0010085 @ hg38
Exon Skipping
Gene
ENSG00000180999 | C1orf105
Description
chromosome 1 open reading frame 105 [Source:HGNC Symbol;Acc:HGNC:29591]
Coordinates
chr1:172420688-172456489:+
Coord C1 exon
chr1:172420688-172420906
Coord A exon
chr1:172445073-172445158
Coord C2 exon
chr1:172456415-172456489
Length
86 bp
Sequences
Splice sites
3' ss Seq
TGTTCTCTATTTCCCTCTAGGCT
3' ss Score
11.18
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
ATGTAAATCACACAGATGTTGGTAGAGAAAAAGGCATACTGGTATTGAAACTGTAAACTGGCCTGTTTACTTCGTCTCCTAACAAAAAACACTTTGGATTCAGGTTCTCCACAGCAGTCTTCCACTGGCCACAGTGAGGGGAGCTAGGTTTCCCCAGTCTCCAGCTAGAAAAACTCAGAACATCTAAAGATCTGAAAGATGGAAAAAAGAGAACTAAAG
Seq A exon
GCTTCTGTTCCAAAATTTGACAAGATTCCTTGGCTTAGTGAGGCCAGCCTTGTAAACAAGCCATTAGTGCTCAGCCTTCCCAGAAG
Seq C2 exon
GCCAGGAGGAACCAGTGTGACTCCATGCTGCTCAGAAACCAACAGCTGTGCTCCACATGTCAAGAAATGAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180999_MULTIEX1-3/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.321 A=0.000 C2=0.133
Domain overlap (PFAM):
C1:
NO
A:
PF150811=DUF4548=PU(11.4=65.5)
C2:
PF150811=DUF4548=FE(14.4=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCACAGCAGTCTTCCACT
R:
GGAGCACAGCTGTTGGTTTCT
Band lengths:
168-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development