MmuEX6028683 @ mm10
Exon Skipping
Gene
ENSMUSG00000086277 | 4930558K02Rik
Description
RIKEN cDNA 4930558K02 gene [Source:MGI Symbol;Acc:MGI:1922618]
Coordinates
chr1:161964822-161969148:-
Coord C1 exon
chr1:161968965-161969148
Coord A exon
chr1:161967911-161967996
Coord C2 exon
chr1:161964822-161964906
Length
86 bp
Sequences
Splice sites
3' ss Seq
TTCCATTTCTCTCTCTGTAGGCT
3' ss Score
11.2
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
AAGCGTCCCGCCCCGAGACTCCACACCGCGAGGTCACTGCTGCCCTCTACTGATTGCTCCTCTCCTGGCAATCTGCTCCTAGTGGAATGCTAAGCCTGGGAAGCAAATCCCTCAGTGGGAATTACTTCACAGGGTGTGGAAGGCAGGAGAAGGCAGGAAGAGTCGCGGGGCTGGTGGAAGACTG
Seq A exon
GCTTTTGTTCCAAAGTTTGACAAGATTCCTTGGCTGAGTGAGGCCAGCCTGGTAAACAAACCATTGATCCTGAGCATCCCCAGAAG
Seq C2 exon
GTACCACTCCTCCTTTGTTCTGACTTCGTACAAGAAGGATATGTATTTGCCACACTTGCTTGAAAATCCAGACTTCCTATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000086277-'1-3,'1-2,5-3=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
NA
A:
PF150811=DUF4548=PU(11.5=65.5)
C2:
PF150811=DUF4548=FE(17.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGAATGCTAAGCCTGGGA
R:
GGATTTTCAAGCAAGTGTGGCA
Band lengths:
173-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types