HsaEX0010085 @ hg19
Exon Skipping
Gene
ENSG00000180999 | C1orf105
Description
chromosome 1 open reading frame 105 [Source:HGNC Symbol;Acc:29591]
Coordinates
chr1:172389828-172417671:+
Coord C1 exon
chr1:172389828-172390046
Coord A exon
chr1:172414213-172414298
Coord C2 exon
chr1:172417581-172417671
Length
86 bp
Sequences
Splice sites
3' ss Seq
TGTTCTCTATTTCCCTCTAGGCT
3' ss Score
11.18
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
ATGTAAATCACACAGATGTTGGTAGAGAAAAAGGCATACTGGTATTGAAACTGTAAACTGGCCTGTTTACTTCGTCTCCTAACAAAAAACACTTTGGATTCAGGTTCTCCACAGCAGTCTTCCACTGGCCACAGTGAGGGGAGCTAGGTTTCCCCAGTCTCCAGCTAGAAAAACTCAGAACATCTAAAGATCTGAAAGATGGAAAAAAGAGAACTAAAG
Seq A exon
GCTTCTGTTCCAAAATTTGACAAGATTCCTTGGCTTAGTGAGGCCAGCCTTGTAAACAAGCCATTAGTGCTCAGCCTTCCCAGAAG
Seq C2 exon
ATATCCTCATACCTCTGCGACTTTTCTGACTTCATCCAAGAAGAATATGAATTTGCCAATTTTGTTTCAAGTTCCAGATGTTTTATCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180999-'0-4,'0-2,4-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF150811=DUF4548=PU(11.4=65.5)
C2:
PF150811=DUF4548=FE(18.1=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTGTTTACTTCGTCTCCT
R:
AAGTCGCAGAGGTATGAGGAT
Band lengths:
183-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)