HsaEX6037024 @ hg19
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225273379-225288586:+
Coord C1 exon
chr1:225273379-225273491
Coord A exon
chr1:225284820-225284941
Coord C2 exon
chr1:225288415-225288586
Length
122 bp
Sequences
Splice sites
3' ss Seq
ATATGTTTTTATCATTGTAGGAT
3' ss Score
9.52
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
AGATTTACTCTATCTTCATAATTCCATCTATAGATGACATATCAGCTCAGTTAGAAGAGTCTCAAGTCATACTTGCAACAATTAAAGGATCTCCCCACATTGGGCCCATTAAG
Seq A exon
GATCTTGTGAATGAATGGGATCAAAACTTGACTCTCTTCTCTTACACCCTTGAGGAATGGATGAATTGTCAAAGAAATTGGCTTTATCTTGAACCAGTCTTTCATTCTTCAGAAATACGAAG
Seq C2 exon
GCAACTCCCAGCAGAAACAGAACTTTTCTCTCAAGTGATTTCCATGTGGAAAAAAATAATGTCAAAAATACAAAACAAACAGAATGCTTTGCAGATAACCACTTCTGCAGGAGTCCTTGAAATTCTGCAAAATTGTAATATACATCTTGAACATATAAAGAAAAGCCTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842-'36-42,'36-41,38-42=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(7.7=13.2),PF083938=DHC_N2=FE(68.5=100)
A:
PF083938=DHC_N2=FE(9.7=100)
C2:
PF083938=DHC_N2=FE(13.8=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGACATATCAGCTCAGTTAGAAGA
R:
TACAATTTTGCAGAATTTCAAGGACT
Band lengths:
218-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)