MmuEX0014965 @ mm10
Exon Skipping
Gene
ENSMUSG00000047369 | Dnah14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:181632326-181637927:+
Coord C1 exon
chr1:181632326-181632571
Coord A exon
chr1:181634326-181634447
Coord C2 exon
chr1:181637756-181637927
Length
122 bp
Sequences
Splice sites
3' ss Seq
GATTTTTTCCTCTTTTGTAGCAA
3' ss Score
8.94
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
CTGTTTCCATATGAACGGAAAATAAATGAAATATCAATCTCGGCAACTAACGAAGCTGCTCTTGAAAAAATGCTGTTTAAGATCATCGATCTCTGGAACACGACTCCCTTGCACCTGGTCCCTCATCTCACAGAGGGCCGTTCCATCCTCATCATCTCCTCCACTGACGACTTGATAACCCAGCTGGAAGACTCCCAGGCCATCCTTGCATCAATCAAAGGATCGTCCTACCTCAGGCCAATTAAG
Seq A exon
CAACTTGTGATTAAATGGAATCAAAACTTAACCCTCTTCTCTCAGACCATTGACGAATGGGTGACCTGTCAAAGAACTTGGCTTTCTCTTGAACCAATCTTTCAGTCTTTAGAAATACAAAA
Seq C2 exon
ACAGCTTGCAGCGGAAGCCAAACTCTTCTCCCAGGTGCTCGTCATGTGGAAAGAAATAATGTCTCGGGTACTGAACAAGCTCAACGCCCTACATATAACCATCAGCACGGGGATTCTCGGCGTTCTGAAGAGTTGCAACAGCCATCTTGAAAGCATAAAGAAGAGTCTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369-'23-23,'23-22,24-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(19.6=100)
A:
PF083938=DHC_N2=FE(9.7=100)
C2:
PF083938=DHC_N2=FE(13.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACTAACGAAGCTGCTCT
R:
CACCTGGGAGAAGAGTTTGGC
Band lengths:
242-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types