HsaEX6038185 @ hg19
Exon Skipping
Gene
ENSG00000181626 | ANKRD62
Description
ankyrin repeat domain 62 [Source:HGNC Symbol;Acc:35241]
Coordinates
chr18:12097639-12103227:+
Coord C1 exon
chr18:12097639-12097776
Coord A exon
chr18:12099614-12099681
Coord C2 exon
chr18:12103157-12103227
Length
68 bp
Sequences
Splice sites
3' ss Seq
TACTGCATTTTGATACATAGCAT
3' ss Score
2.79
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
AACAGCCCTGATACTTGCTGCTCGTAATGGATCAACAAGTGTAGTCTACCAGCTTCTTCAGCACAATATTGATGTCTTTTGCCAAGATATATCTGGATGGACTGCAGAAGACTACGCTGTTGCTTCTAAGTTTCAAGC
Seq A exon
CATTCGTGGAATGATTTCTGAATATAAAGCAAACAAGAGATGTAAAAGTCTTCAAAATAGCAATTCAG
Seq C2 exon
AACAAGACTTAGAAATGACATCAGAGGGAGAGCAAGAAAGGCTTGAAGGATGTGAAAGTAGCCAGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181626-'4-6,'4-4,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.417 C2=1.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(49.5=100)
A:
PF127962=Ank_2=PD(17.2=66.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGCCCTGATACTTGCTGC
R:
AGCCTTTCTTGCTCTCCCTCT
Band lengths:
181-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)