HsaEX6042605 @ hg19
Exon Skipping
Gene
ENSG00000166743 | ACSM1
Description
acyl-CoA synthetase medium-chain family member 1 [Source:HGNC Symbol;Acc:18049]
Coordinates
chr16:20682853-20693785:-
Coord C1 exon
chr16:20693578-20693785
Coord A exon
chr16:20685366-20685422
Coord C2 exon
chr16:20682853-20682993
Length
57 bp
Sequences
Splice sites
3' ss Seq
TTTTAATTCCTGTTCCACAGGTA
3' ss Score
10.24
5' ss Seq
AAGGTCATC
5' ss Score
2.14
Exon sequences
Seq C1 exon
GGATCATCTTCATTCCTGCGACCATCCTGTTGAAGGCCAAAGACATTCTCTATCGACTACAGTTGTCTAAAGCCAAGGGCATTGTGACCATAGATGCCCTTGCCTCAGAGGTGGACTCCATAGCTTCTCAGTGCCCCTCTCTGAAAACCAAGCTCCTGGTGTCTGATCACAGCCGTGAAGGGTGGCTGGACTTCCGATCGCTGGTTAA
Seq A exon
GTAGAAGAATGCCATTCACTCCCAAGTGGTGAGAGACAAGCAGCCAGTGGTAGGAAG
Seq C2 exon
ATCAGCATCCCCAGAACACACCTGTGTTAAGTCAAAGACCTTGGACCCAATGGTCATCTTCTTCACCAGTGGGACCACAGGCTTCCCCAAGATGGCAAAACACTCCCATGGGTTGGCCTTACAACCCTCCTTCCCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166743-'5-9,'5-8,7-9=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(46.8=94.3)
A:
NO
C2:
PF0050123=AMP-binding=FE(11.3=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAGCTCCTGGTGTCTGAT
R:
TGTGGTCCCACTGGTGAAGAA
Band lengths:
141-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)