HsaEX6042605 @ hg38
Exon Skipping
Gene
ENSG00000166743 | ACSM1
Description
acyl-CoA synthetase medium-chain family member 1 [Source:HGNC Symbol;Acc:HGNC:18049]
Coordinates
chr16:20671531-20676161:-
Coord C1 exon
chr16:20676125-20676161
Coord A exon
chr16:20674073-20674100
Coord C2 exon
chr16:20671531-20671671
Length
28 bp
Sequences
Splice sites
3' ss Seq
TTTTAATTCCTGTTCCACAGGTA
3' ss Score
10.24
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
ACTTTAACTTCCTGGAGCTCTAATTTCTCCTTCTCAG
Seq A exon
GTAGAAGAATGCCATTCACTCCCAAGTG
Seq C2 exon
ATCAGCATCCCCAGAACACACCTGTGTTAAGTCAAAGACCTTGGACCCAATGGTCATCTTCTTCACCAGTGGGACCACAGGCTTCCCCAAGATGGCAAAACACTCCCATGGGTTGGCCTTACAACCCTCCTTCCCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166743-'8-11,'8-10,9-11
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0050123=AMP-binding=FE(11.3=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGAGCTCTAATTTCTCCT
R:
TTTTGCCATCTTGGGGAAGCC
Band lengths:
128-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains