Special

HsaEX6042603 @ hg38

Exon Skipping

Gene
Description
acyl-CoA synthetase medium-chain family member 1 [Source:HGNC Symbol;Acc:HGNC:18049]
Coordinates
chr16:20671531-20697788:-
Coord C1 exon
chr16:20697636-20697788
Coord A exon
chr16:20685193-20685403
Coord C2 exon
chr16:20671531-20671671
Length
211 bp
Sequences
Splice sites
3' ss Seq
TAATATATGGTCTTGACCAGGAG
3' ss Score
5.32
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GTCCCCCTTCGCTGTGGCCAGAAGCCAAGTTCTGCTGGGTGCACAATCCTGCGGATCACCTGATCAGAGAGAACTGAACCTACAAAAGAGAGCTCAACCTCCTTTTCCATACCTACCAGGGACCTAGTTCAGCTACGTCCTAAACAGTACCAG
Seq A exon
GAGGGCAAGAGAGGTCCAAATCCAGCTTTTTGGTGGGTGAATGGCCAAGGGGATGAAGTAAAGTGGAGCTTCAGAGAGATGGGAGACCTAACCCGCCGTGTAGCCAACGTCTTCACACAGACCTGTGGCCTACAACAGGGAGACCATCTGGCCTTGATGCTGCCTCGAGTTCCTGAGTGGTGGCTGGTGGCTGTGGGCTGCATGCGAACAG
Seq C2 exon
ATCAGCATCCCCAGAACACACCTGTGTTAAGTCAAAGACCTTGGACCCAATGGTCATCTTCTTCACCAGTGGGACCACAGGCTTCCCCAAGATGGCAAAACACTCCCATGGGTTGGCCTTACAACCCTCCTTCCCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166743_MULTIEX2-2/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
NA
A:
PF0050123=AMP-binding=FE(16.9=100)
C2:
PF0050123=AMP-binding=FE(11.3=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Other assemblies
Conservation
Chicken
(galGal4)
Chicken
(galGal3)
HIGH PSI
([1])
Zebrafish
(danRer10)
ALTERNATIVE
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCGCTGTGGCCAGAAG
R:
CTTCCTGGGAAGGAGGGTTGT
Band lengths:
289-500
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains