DreEX0010852 @ danRer10
Exon Skipping
Gene
ENSDARG00000004880 | acsm3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:ZFIN;Acc:ZDB-GENE-080220-22]
Coordinates
chr2:44887514-44893725:-
Coord C1 exon
chr2:44893312-44893725
Coord A exon
chr2:44890849-44891059
Coord C2 exon
chr2:44887514-44887721
Length
211 bp
Sequences
Splice sites
3' ss Seq
ATTTGATGTATATATTCTAGAGT
3' ss Score
6.4
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
GTTCTGCAATGTCTCAACTTTGATGGACTTTTATTTTCAGAACTTGATTTAATAGAAAGGGAAACGATTATTTAATGCAACCATTCTGAGATGCCGATCCGTGTGAAAGTTTCAGCTGTGTGATTAATGTCGGGCTGGAGAAACAACTACTTGAGAGCTTTAGCTTTACAGCGATAAAGATTAATAATGAACTTGTACGTGTTTAGCAATCATGTTTTTAAACGCTGTCTGAAAAACAGCCAGAGAAATGAAGTATACGCGCGAGGTCAGTGGCTGCAAACGTGCAGATTTAAAACATCTGCACCGAAAAACTTCAGCGATTACGAGAGCATGAGGAGCACTTACAAGATACAAGTTCCACAGCGGTTTAACTTCGCCAAAGATGTGCTCGAGAAGTGGGAAACCAAAGAAAAG
Seq A exon
AGTGGACAGAGATCGTCTCTTCCTGCTCTGTGGTGGGTAAATGATCACGGGACAGAGGTCAGGTGGAGTTTTGAGGAGTTGGGCTTCCACTCTAGAAAACTTGCAAACGTCCTGCGTCAGGTGTGCAGTTTGGAAAGAGGGGATCGTGTGTTCCTCATCTTACCCAGAGTCCCTGAGTGGTGGCTGGTTAATGTGGCATGTATAAGAACAG
Seq C2 exon
GTACAGTTCTCATTCCTGGCACCTCTCAGCTCACAGCTCGAGATATGCGTCACAGACTGATAACGTCTGGGGCCAAGTGTGTGATCACAGATGAAACTCTGGCTCCACTGTTGGACACTGTAGCCTTAGACTGCCCTTCCATTTCCACCAAGCTGCTGCTGTCCCACAAGCCCATGGACGGCTGGGGCAACCTGACAGAGCTCATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004880-'1-1,'1-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PU(0.7=3.9)
A:
PF0050123=AMP-binding=FE(16.9=100)
C2:
PF0050123=AMP-binding=FE(16.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTATACGCGCGAGGTCAG
R:
ATGGAAGGGCAGTCTAAGGCT
Band lengths:
307-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]