GgaEX1006064 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr14:15627250-15629929:+
Coord C1 exon
chr14:15627250-15627459
Coord A exon
chr14:15628820-15629030
Coord C2 exon
chr14:15629722-15629929
Length
211 bp
Sequences
Splice sites
3' ss Seq
TGTACCCTGTTGTTCTATAGGAG
3' ss Score
9.44
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
GTTGCTGCTGCCATGCGGTGTCTACTGAAGGCCCTGAGCGTTGTGTCCCTGCATGCTTCCCTGAGAAGATCTCGCCAGCTTTGCAGCCAGAGCTCCTCAGCTCAAACCTCATTTAGTTACGAACTCATAAAACAGCAGTACAGACCAGAGGTGCCAGAGTACTTCAACTTTGCGAGCGATGTGCTAGACAGATGGGCCAAAGTAGAAAAG
Seq A exon
GAGGGAAAAAAGACTAAAAACCCCGCACTGTGGTGGGTAGATGGTGATGGAGAAGAGGTGAAGTGGAGCTTTGAAGAGCTGGGAGTGCTGTCCAGGAAAGCAGCCAATGTACTCTCTGGTGCCTGCAGTCTGCAGTGCGGGGACAGAGTTCTTCTGCTTCTGCCACGGATCCCAGAGTGGTGGCTGCTGAATGTGGCTTGCATGAGAACAG
Seq C2 exon
GAACCGTCCCGATTCCTGGCACACAGCAGCTGACAGCAAAGGACATTCTCTATCGCCTACAGAAATCCAAGGCAAAGGGCGTCATCACCAATGACTCTGTGGCATCAACTGTAGAGTCAGTAGAGGCTGACTGCCAGTCTCTGAAGTTCAAGTTGCTGGTGTCAGAGGGCCACCGAGAGGGGTGGCTGAGCTTCAAGGATCTCCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002200-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PU(1.2=7.1)
A:
PF0050123=AMP-binding=FE(16.8=100)
C2:
PF0050123=AMP-binding=FE(16.6=100)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGCGGTGTCTACTGAAGG
R:
TCATTGGTGATGACGCCCTTT
Band lengths:
294-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]