Special

GgaEX1006064 @ galGal3

Exon Skipping

Description
NA
Coordinates
chr14:15627250-15629929:+
Coord C1 exon
chr14:15627250-15627459
Coord A exon
chr14:15628820-15629030
Coord C2 exon
chr14:15629722-15629929
Length
211 bp
Sequences
Splice sites
3' ss Seq
TGTACCCTGTTGTTCTATAGGAG
3' ss Score
9.44
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
GTTGCTGCTGCCATGCGGTGTCTACTGAAGGCCCTGAGCGTTGTGTCCCTGCATGCTTCCCTGAGAAGATCTCGCCAGCTTTGCAGCCAGAGCTCCTCAGCTCAAACCTCATTTAGTTACGAACTCATAAAACAGCAGTACAGACCAGAGGTGCCAGAGTACTTCAACTTTGCGAGCGATGTGCTAGACAGATGGGCCAAAGTAGAAAAG
Seq A exon
GAGGGAAAAAAGACTAAAAACCCCGCACTGTGGTGGGTAGATGGTGATGGAGAAGAGGTGAAGTGGAGCTTTGAAGAGCTGGGAGTGCTGTCCAGGAAAGCAGCCAATGTACTCTCTGGTGCCTGCAGTCTGCAGTGCGGGGACAGAGTTCTTCTGCTTCTGCCACGGATCCCAGAGTGGTGGCTGCTGAATGTGGCTTGCATGAGAACAG
Seq C2 exon
GAACCGTCCCGATTCCTGGCACACAGCAGCTGACAGCAAAGGACATTCTCTATCGCCTACAGAAATCCAAGGCAAAGGGCGTCATCACCAATGACTCTGTGGCATCAACTGTAGAGTCAGTAGAGGCTGACTGCCAGTCTCTGAAGTTCAAGTTGCTGGTGTCAGAGGGCCACCGAGAGGGGTGGCTGAGCTTCAAGGATCTCCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002200-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0050123=AMP-binding=PU(1.2=7.1)
A:
PF0050123=AMP-binding=FE(16.8=100)
C2:
PF0050123=AMP-binding=FE(16.6=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
ALTERNATIVE
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGCGGTGTCTACTGAAGG
R:
TCATTGGTGATGACGCCCTTT
Band lengths:
294-505
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]