BtaEX6108984 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006447 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]
Coordinates
chr25:18605635-18628147:+
Coord C1 exon
chr25:18605635-18605853
Coord A exon
chr25:18606645-18606855
Coord C2 exon
chr25:18627940-18628147
Length
211 bp
Sequences
Splice sites
3' ss Seq
ACTTGTTTGTCTTTCCTCAGGCT
3' ss Score
10.15
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
ACGTTAGCCCTTGTCACCATGAAGATATTACTTTGTGCCAAATATTTTCAGTGCCCAGTAATTCCTGGCTCTATGAGAGCATTGCATAAAGATTACAGAACAGTGACCCCTCAGAATTTCTCCAACTATGAATCCATGAAACAGGACTTTAAACTAGAGATCCCAGAGTATTTCAACTTTGCCAAAGATGTCCTGGACCAATGGACCAGTATGGAAAAG
Seq A exon
GCTGGGAAGAAACCTTCCAATCCAGCCTTCTGGTGGACAAATGGAAATGGAGAAGAAGTGAGATGGAGTTTTGAGGAACTAGGATCTTTATCAAGGAAATTTGCAAATATACTTACAGAAGCCTGTGGCCTGCAAAGGGGAGATCGAGTAATTTTGCTTTTGCCCAGGATCCCTGAATGGTGGCTTGCAAATATAGCCTGTCTGCGCACAG
Seq C2 exon
GGACAGTTCTAATTCCAGGAACCACTCAGATGACCCAAAAAGACATCCTCTACCGACTACAATCTTCAAAAGCAAAGTGCATTATTACCAATGAAGTTTTAGCTCCAGCAGTTGATGCTGTTGCATCTAAATGTGAAAATCTGCACTCCAAACTAATTGTGTCTCAGAGCCCCAGAGAGGGTTGGGAGAACCTAAAGGAGATGATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006447-'1-5,'1-2,2-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.043
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PU(0.5=2.7)
A:
PF0050123=AMP-binding=FE(16.9=100)
C2:
PF0050123=AMP-binding=FE(16.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAACAGTGACCCCTCAGA
R:
TCTGGGGCTCTGAGACACAAT
Band lengths:
301-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]