GgaEX1006064 @ galGal4
Exon Skipping
Gene
ENSGALG00000002200 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]
Coordinates
chr14:14912018-14915851:+
Coord C1 exon
chr14:14912018-14912118
Coord A exon
chr14:14914742-14914952
Coord C2 exon
chr14:14915644-14915851
Length
211 bp
Sequences
Splice sites
3' ss Seq
TGTACCCTGTTGTTCTATAGGAG
3' ss Score
9.44
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
AGCAGCAGTGCCAGAAGAGCTGTGCAACCGAAGCCTTGGATTTGTGCAAACGATCAAAACTGGGGCACATCTCAGCTGTTGGAGGACTCAGAGATTGACAG
Seq A exon
GAGGGAAAAAAGACTAAAAACCCCGCACTGTGGTGGGTAGATGGTGATGGAGAAGAGGTGAAGTGGAGCTTTGAAGAGCTGGGAGTGCTGTCCAGGAAAGCAGCCAATGTACTCTCTGGTGCCTGCAGTCTGCAGTGCGGGGACAGAGTTCTTCTGCTTCTGCCACGGATCCCAGAGTGGTGGCTGCTGAATGTGGCTTGCATGAGAACAG
Seq C2 exon
GAACCGTCCCGATTCCTGGCACACAGCAGCTGACAGCAAAGGACATTCTCTATCGCCTACAGAAATCCAAGGCAAAGGGCGTCATCACCAATGACTCTGTGGCATCAACTGTAGAGTCAGTAGAGGCTGACTGCCAGTCTCTGAAGTTCAAGTTGCTGGTGTCAGAGGGCCACCGAGAGGGGTGGCTGAGCTTCAAGGATCTCCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002200-'0-3,'0-0,2-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0050123=AMP-binding=FE(16.8=100)
C2:
PF0050123=AMP-binding=FE(16.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAGCTGTGCAACCGAAG
R:
GGAGATCCTTGAAGCTCAGCC
Band lengths:
293-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]