RnoEX6004615 @ rn6
Exon Skipping
Gene
ENSRNOG00000032246 | Acsm3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:RGD Symbol;Acc:62086]
Coordinates
chr1:189522288-189527941:+
Coord C1 exon
chr1:189522288-189522561
Coord A exon
chr1:189523172-189523382
Coord C2 exon
chr1:189527734-189527941
Length
211 bp
Sequences
Splice sites
3' ss Seq
GACTGCTCTGCTTTCCTCAGACT
3' ss Score
7.94
5' ss Seq
CAGGTTCGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
CTGGAGTAGTCTGCATGGAAATCTCACATTCCAAAACAATTAATAATATTGATACTAGCTATCTCTTGTCACCATGGCAATGTTACTTCGTGCTAGGTGTTTTCACCGCCTAGCAATCCCTGATCCCAGGAGAATCTTGTATAAAGATTACAGAACAGCGATTCCTCAGAACTTTTCCAACTATGAGTCCATGAAACATGACTTCAAAATAGAGATTCCAGAGTATTTCAATTTTGCAAAAGATGTTTTGGACCAATGGACCAATACGGAAAAG
Seq A exon
ACTGGAAAAAGACTTTCCAATCCAGCCTTCTGGTGGGTAGATGGAAATGGAAAGGAGGTGAGATGGAGTTTTGAAGAACTTGGGTCTTTATCCAGGAAATTTGCCAACATACTCACAGAAGCCTGTTCCCTGCAAAGAGGAGATAGAGTAATGGTGATTCTGCCCAAGATCCCAGAGTGGTGGCTTGCAAATGTAGCCTGTCTGCGAACAG
Seq C2 exon
GGACAGTTTTAATTCCAGGAACCACTCAGCTGACCCAGAAAGACATCCTCTACAGGCTACAATCTTCAAAATCAAAGTGCATTATTACTGATGATACTTTGGCCCCAGCAGTAGATATTGTAGCAGCTAAATGTGAAAATCTCCACTCCAAATTAATTGTGTCTCAGCACTCCAGAGAAGGCTGGGGGAACCTCAAGGAGATGATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032246-'3-6,'3-3,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PU(0.5=3.0)
A:
PF0050123=AMP-binding=FE(16.9=100)
C2:
PF0050123=AMP-binding=FE(16.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCACCGCCTAGCAATCCC
R:
TATCTACTGCTGGGGCCAAAGT
Band lengths:
292-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]