RnoEX0006217 @ rn6
Exon Skipping
Gene
ENSRNOG00000042084 | Acsm2
Description
acyl-CoA synthetase medium-chain family member 2 [Source:RGD Symbol;Acc:708383]
Coordinates
chr1:189364274-189373290:+
Coord C1 exon
chr1:189364274-189364479
Coord A exon
chr1:189369320-189369530
Coord C2 exon
chr1:189373083-189373290
Length
211 bp
Sequences
Splice sites
3' ss Seq
TGGTCTCTAATCTTAACTAGGAG
3' ss Score
6.3
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
TGGACTACCTAAATATGCAGTGGCTGAGGAGGTTCCTGACTCCACTGGGCATCTGCAAATTCTTGCACAGATTCTCCCTACACCGTCCACAGCTGCACAGATGGTTGATTTCAGGAGACGGAGCTCAAAGATGGAATGACTATGATTCACCTGAGGAGTTTAACTTTGCAAGTCATGTCCTGGACTACTGGGCTCAAATGGAAGGG
Seq A exon
GAGGGCAAGAGAGGACCAGGTCCAGCCTTATGGTGGGTGAATGACCAAGGAGATGAAATAAAGTGGAGCTTCAGGGAGCTGAGGGACCTCAGCCGCCGTGCTGCCAACGTCTTTGAGCAGACTTGTGGCCTGCAGCATGGAGATCGCCTGGCCTTGATTCTGCCTCGAGTGCCGGAGTGGTGGCTGGTGACAGTGGGCTGCATTCGAACAG
Seq C2 exon
GAGTCATCTTCATTCCTGGGACTGCCCAAATGAAAGCCAAGGATATTCTCTACCGAATACAAATGTCTCAAGCCAAAGCCATTGTGACCACAGACAGCCTTGTTCCAGAGGTGGAATCTGTGGCTTCTGAGTGTCCTGGTCTGAAAACCAAGATAGTGGTGTCTGATCACAACCATGAAGGGTGGCTTAACTTCCGGACACTGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042084-'30-28,'30-27,31-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PU(0.5=3.1)
A:
PF0050123=AMP-binding=FE(16.9=100)
C2:
PF0050123=AMP-binding=FE(16.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATGCAGTGGCTGAGGAGGT
R:
ACCTCTGGAACAAGGCTGTCT
Band lengths:
306-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]