MmuEX6013590 @ mm9
Exon Skipping
Gene
ENSMUSG00000033533 | Acsm1
Description
acyl-CoA synthetase medium-chain family member 1 [Source:MGI Symbol;Acc:MGI:2152200]
Coordinates
chr7:126766012-126780094:+
Coord C1 exon
chr7:126766012-126766203
Coord A exon
chr7:126776576-126776786
Coord C2 exon
chr7:126779964-126780094
Length
211 bp
Sequences
Splice sites
3' ss Seq
TGGTATCTAATCTTACCTAGGAG
3' ss Score
6.22
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GACTGCCCTAATATGCAGTGGCTGAAGAGTTTCCAGATCTGCAAAGTCTTACAGGGCTTCTCCCTAAGCCCCACCCAGCTGCACAGACGGTTGTTTTCAAGAGTTGGAGCTCCAAGATGGAATGACCATGATTCACCTGAGGAGTTTAACTTTGCAAGTGATGTCCTGGACTACTGGGCTCAAATGGAGGAG
Seq A exon
GAGGGCAAGAGAGGACCAAGTCCAGCCTTTTGGTGGGTGAATGGCCAAGGAGATGAAATAAAGTGGAGCTTCAGGAAGCTGAGGGACCTCACCTGTCGCACTGCCAACGTCTTTGAGCAGATTTGTGGCCTGCAGCAAGGAGATCACCTGGCCTTGATTCTGCCCCGAGTGCCCGAGTGGTGGTTGGTGACAGTGGGCTGCATGCGAACAG
Seq C2 exon
GGATCATCTTCATGCCTGGGACTACCCAACTGAAAGCCAAGGACATTCTCTACCGAATACAAATATCTCGAGCCAAAGCCATTGTGACCACAGCTAGCCTTGTCCCAGAGGTGGAATCTGTGGCTTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033533-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PU(0.5=3.3)
A:
PF0050123=AMP-binding=FE(16.9=100)
C2:
PF0050123=AMP-binding=FE(16.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGGCTGAAGAGTTTCCA
R:
CCACAGATTCCACCTCTGGGA
Band lengths:
301-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: