GgaEX1003817 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr14:14473240-14489759:-
Coord C1 exon
chr14:14489547-14489759
Coord A exon
chr14:14473855-14474065
Coord C2 exon
chr14:14473240-14473447
Length
211 bp
Sequences
Splice sites
3' ss Seq
GGAATCCTTGTGGTTTTTAGGCT
3' ss Score
5.91
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
AGGATGGAAGGCGACCCGTAAATCCAGCTTTTTGGTGGGTGAATGATGAAGGGGAGGAGGTGAAGTGGAGCTTTGAAGAGTTGGGATTTCTGTCCAGGAAAACAGCTAACATACTGTCTGAGGCATGTGGTTTGCAGAGAGGTGATAGAGTTCTGGCAGTTCTGCCTCGTGTCCCTGAATGGTGGCTACTGAGTATAGCCTGCATCCGGGCAG
Seq A exon
GCTGGAAAAAGACCAACAAACTCTGCTTTTTGGTGGATAAGTGGAAATGGAGAAGAAGTAAAGTGGAGCTTTGAGGAGCTGGGATTCCTTTCTCGGAAAGTAGCCAACGTGTTGACCAAAGTGTGTGGACTGCAAAAAGGGGACAGAGTCATTCTGGTCCTGCCGCGAATCCCGGAATGGTGGCTGGTGAACGTGGCTTGCATTCGAGCAG
Seq C2 exon
GAATTGTCTTAATTCCAGGAACATCCCAATTATCAGCCAAAGACATATTATATCGACTCCAGGCTTCGAAGGCCAAGTGCATCATTACCAACGACACTCTGGCTCCTGCAGTAGACTCAGTGGCATCTGAGTGCCAGTTTCTTAAAAACAAGCTGATGGTGTCCAAAGGCAGTAGGGAGGGATGGCTGAACTTCAATGAACTGTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018875_MULTIEX1-14/24=C1-15
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0050123=AMP-binding=FE(16.9=100)
C2:
PF0050123=AMP-binding=FE(16.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGGGAGGAGGTGAAGTG
R:
GAAACTGGCACTCAGATGCCA
Band lengths:
308-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]