GgaEX1003817 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr14:15228169-15230036:-
Coord C1 exon
chr14:15229845-15230036
Coord A exon
chr14:15228784-15228994
Coord C2 exon
chr14:15228169-15228376
Length
211 bp
Sequences
Splice sites
3' ss Seq
GGAATCCTTGTGGTTTTTAGGCT
3' ss Score
5.91
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
ATTTGTAAATTACGGACTCTAAAATCGTTGTGGACTCTGAAGCCTCCTTGTAGGACTTTCCATGGGCATCCCAGGCTGCTTGTCTCTGATGTGCACTCTCAGTACGAGTCTGTCAGACGTGGTGAACAGGAAATACCAAAGTACTTTAACTTTGCAAGTGATGTACTGGACAAATGGTCTGAGATTGAAAAG
Seq A exon
GCTGGAAAAAGACCAACAAACTCTGCTTTTTGGTGGATAAGTGGAAATGGAGAAGAAGTAAAGTGGAGCTTTGAGGAGCTGGGATTCCTTTCTCGGAAAGTAGCCAACGTGTTGACCAAAGTGTGTGGACTGCAAAAAGGGGACAGAGTCATTCTGGTCCTGCCGCGAATCCCGGAATGGTGGCTGGTGAACGTGGCTTGCATTCGAGCAG
Seq C2 exon
GAATTGTCTTAATTCCAGGAACATCCCAATTATCAGCCAAAGACATATTATATCGACTCCAGGCTTCGAAGGCCAAGTGCATCATTACCAACGACACTCTGGCTCCTGCAGTAGACTCAGTGGCATCTGAGTGCCAGTTTCTTAAAAACAAGCTGATGGTGTCCAAAGGCAGTAGGGAGGGATGGCTGAACTTCAATGAACTGTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018875-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PU(0.5=3.1)
A:
PF0050123=AMP-binding=FE(16.7=100)
C2:
PF0050123=AMP-binding=FE(16.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGCTGCTTGTCTCTGATG
R:
GCCTTTGGACACCATCAGCTT
Band lengths:
292-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]