HsaEX6064956 @ hg38
Exon Skipping
Gene
ENSG00000215009 | ACSM4
Description
acyl-CoA synthetase medium-chain family member 4 [Source:HGNC Symbol;Acc:HGNC:32016]
Coordinates
chr12:7304284-7310746:+
Coord C1 exon
chr12:7304284-7304532
Coord A exon
chr12:7306533-7306743
Coord C2 exon
chr12:7310539-7310746
Length
211 bp
Sequences
Splice sites
3' ss Seq
TTCCATGTGTCCCTGGTCAGACA
3' ss Score
5.57
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
CTGTAGTACTTCTGTGTCCATAGCAGTAGACAAAGTCCTTTGGGAACCATGAAGATTTTTTTCCGCTACCAGACATTTAGATTCATCTGGCTCACCAAGCCACCTGGCCGGCGCTTACACAAAGATCACCAGCTTTGGACGCCTCTGACTCTTGCTGACTTTGAAGCCATAAATCGCTGTAACAGGCCATTGCCTAAAAACTTTAACTTTGCTGCAGATGTGCTGGACCAGTGGTCCCAAAAGGAGAAG
Seq A exon
ACAGGGGAGAGACCAGCTAACCCAGCCCTGTGGTGGGTGAATGGCAAAGGGGATGAGGTAAAATGGAGCTTCAGAGAACTGGGCTCCTTGTCCCGAAAAGCTGCCAACGTGCTCACCAAGCCCTGTGGCCTGCAGAGAGGAGACCGTTTGGCCGTGATTCTGCCCAGAATCCCTGAGTGGTGGCTGGTCAATGTAGCTTGCATACGAACAG
Seq C2 exon
GGATCATCTTCATGCCGGGAACAATCCAGCTGACAGCAAAAGACATCCTCTACCGGCTGCGAGCATCCAAGGCCAAGTGCATTGTGGCCAGTGAGGAGGTGGCCCCAGCGGTGGAGTCCATTGTATTGGAGTGTCCTGACCTTAAGACAAAACTCCTGGTGTCTCCACAAAGCTGGAATGGGTGGCTCAGCTTCCAGGAGTTATTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215009-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PU(0.7=4.5)
A:
PF0050123=AMP-binding=FE(16.9=100)
C2:
PF0050123=AMP-binding=FE(16.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGACGCCTCTGACTCTTG
R:
CACCCATTCCAGCTTTGTGGA
Band lengths:
300-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains