BtaEX6108963 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001417 | ACSM1
Description
acyl-CoA synthetase medium-chain family member 1 [Source:HGNC Symbol;Acc:HGNC:18049]
Coordinates
chr25:18362837-18396420:+
Coord C1 exon
chr25:18362837-18363079
Coord A exon
chr25:18393149-18393359
Coord C2 exon
chr25:18396213-18396420
Length
211 bp
Sequences
Splice sites
3' ss Seq
TGGTATATGATCTTAACCAGGAG
3' ss Score
4.83
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
ACAGGTAGTGACCTGAGAATTCTGTGTCTGTTTCCTGAGGACTGCTCCACTATGCAAAGGCTGATGAAGTTTCGGGTCCTCTGGGGCATCCACATGTCCTTCCCTGGCTTCCACCATGCCCCTCAGCACCTGCGCTGCCGATCTTTATCAGGAGCTGGAACCCTAAGATGGAATGACTATGACAGACCTGAGGAATTTAACTTTGCAAGTGATGTACTGGACCACTGGACTCAAATGGAGAAG
Seq A exon
GAGGGCAAGAGAAGTCCAAACCCAGCCCTGTGGTGGGTGAACGATCAAGGGGATGAAGTGAAGTGGAGCTTCAGAGAGATGACAGACTTAACCTGTCGCACAGCCAACGTCCTGACACAGACCTGCGGCCTTCAGACGGGAGACCGTCTAGCGTTGATTTTGCCTCGAGTGCCTGAGTGGTGGCTTGTGTGTGTGGGCTGCATCCGAACAG
Seq C2 exon
GGATCATCTTCATGCCAGGGACCACCCAGATGAAGGCCAAGGACATTCTCTACCGACTACAAGTGTCTGGAGCCAAAGCCATCGTGACCACAGATACCCTTGCCCCAGAGGTGGAGTCTGTGGCACCTGAGTGTCCTTCTCTGAAAACCAAGCTCCTGGTGTCTGACCACAGCCGTGAAGGGTGGCTGGACTTCCGATCACTGGTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001417-'2-11,'2-9,4-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.014 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PU(0.5=3.1)
A:
PF0050123=AMP-binding=FE(16.9=100)
C2:
PF0050123=AMP-binding=FE(16.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCTCCACTATGCAAAGGC
R:
GCAAGGGTATCTGTGGTCACG
Band lengths:
306-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]