HsaINT1002659 @ hg38
Intron Retention
Gene
ENSG00000166743 | ACSM1
Description
acyl-CoA synthetase medium-chain family member 1 [Source:HGNC Symbol;Acc:HGNC:18049]
Coordinates
chr16:20682256-20685403:-
Coord C1 exon
chr16:20685193-20685403
Coord A exon
chr16:20682464-20685192
Coord C2 exon
chr16:20682256-20682463
Length
2729 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
AGTTCCTTTCTCATCCCCAGGGA
3' ss Score
9.7
Exon sequences
Seq C1 exon
GAGGGCAAGAGAGGTCCAAATCCAGCTTTTTGGTGGGTGAATGGCCAAGGGGATGAAGTAAAGTGGAGCTTCAGAGAGATGGGAGACCTAACCCGCCGTGTAGCCAACGTCTTCACACAGACCTGTGGCCTACAACAGGGAGACCATCTGGCCTTGATGCTGCCTCGAGTTCCTGAGTGGTGGCTGGTGGCTGTGGGCTGCATGCGAACAG
Seq A exon
GTCAGTGATGCAAGAGGGACCTGGTGGACCTCGGGGCTGTTCTAGAACCAATGGGTCCTGAGATATTAGGTGCTGTGCACCCAGCCTGGCACTGACACAGCTTTGAAGCCTTCGCCCCAGTTTCTGTGCTGGGACCACAAAGCAAGGCTTCCTGCCCTGTGGGAATTATCAGTTTAATTAGAGACAAAACAATTTCTCTTCTCTGTACCTCCTTTCTTCTTCACAGTCTTTGTCTTTCTCATACTCCCTCACAAATTCTCTTATTCTCTCCCTCACACTCTCACATTCATACACTCTCAAGTGCAGTGCCAAACTTTGTCTCATACACACACACACACAAACACACATACACTTTCTCTTGCACAGCCTCAGAGAGTCTTACTTTTTTAAAGATTCATTGATAATGTTTTTCCATATTTGAGCACTCTCTCCCTCTCTCTTTCTCTCCCTTTCTTACTGAATTATTTAAGAATCACTAGTGGGCATTGTGACACCTATGAACACCAGGTAAACACTCATAAACACAAAAGCAGGCATCTGATAAGATCCAAAATATTCCACAGCCTTTTCTGCATGACAGTGACATTTTTGAAGAATGCAAGTTGTATTGTAGAATATATCTCCAAATTTGTATTTCTGACTCTTTCTTTGTGATTATATTCAGATTAGACACGTTAGGCAGGAGAATTGCAAGGACAAAGTTGTGTCTTCCTCTGTGCATCACATCAGGGGGTATATTCTGAAGTCAGTTTGTTCCCTCTTCAGTTATACTGTTTTATCACTTAAGCAAGGTGGTTTTCACAGAAAACCTTTATCCTTTACAAAGGCACAATTTTTCCTTGTAATTAATAAATAATTCATTGTGTGATCCTTAAGCGATTGTGTGAATATTCCTATTCCCTAACATTCTTTCACATTATGGTTTGAGTACCTAGTGATGATTCTTTACCTAATTGAATATTACCATGTTGGTTTTACATGGAAATTTTCTATTTCTGTCAGTTTCATTTATTAGTTAGAATTCTTATGTAGAGATTTCCCTTCCCCTTTTGATGACTTATTTTTTGTCTATATAGATTAGAATCAGTGACTCACAGATTCTTTTTTGAATCACTTCTCTCATTTTATCATGTGTACAGCACTCTGCCATACTCTTGATCATATTTTCTCTCTCTCCGTCTCATATTCTCTCACAAATAAAATAGGTGATTCATTCAGCCAGATCATGTGAAATCAAGAAGTAATAAAACTGGTGGAAGGAGTATAGAGATGAAAAGCCATGTCATCTGTAGACCTATAAGATGGTCCATGGGAAATCTAAGACTTGGCCTGGGTGGTGGCTTAGGCCTATAATACCAGCACTTTGGGAGGCTGAGGTGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAATACAAAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAAAGAAAGAAAGAATTAGCCAGGCGTGGTGGCAAGACTCTCAAAAAAAAAAAAAAAGACTTGAGCTGAGCCCTCTGGGCTAAGAAGAATTAAAGAGGATTAGAAACAAAGGAAGGACATTCCAAGCATGGGGTGAGGCATGGCCATTTTGAAATAGAAAATAAGGTGTAGGGGAGAAAGATGGAAAGAAAGCAGCATCTTCAAAGTCAGGACGAGAAGTGTGGTGTTTTCCTGGAGAGAGGGTACAGGTGTTAGTGCAGAGAAGAAATGTAGGGAGGCCAGGCATGGTGGCTCACAGCTGTAATCCCAGCACTTTGGGAGGCTAAGGCAGACAGATCACTTGTGGTCAGAAGTCCAAGACCATCCTGGCCAACCTGGTGAAAACCTATCTCTACTAAAAATAATAATAATAATAAAAAATAGCTGGGCATGGTGGTGGACACCTTTAATCCCAGCTGCTGGAGAGGCTGAGACAGGACAATTGCTTGAACCCAGGAGGCTGAGGTTGCAGTGAGCTCAGATCACACCACTGCACTCCAGCCTGGGTGACAGGGGGAGACTCCACCTTAAAAAAAAATAAATAAATAAAAGAAAAAAAGAAATTCAGAGGAAAAAAAAGTCAATGTTTATGGAACTAAGCAAATAATAATATGGAAGATGGGTAGCAGGAAGATTCAAAACTGGTGGAGGGATGAGAATCCAGAAGGAAACACAAAGGCTTGAGCTCACTGTTGGCAATGGAGATAGAAGGGAATGCAAAAAACTCAAAGGACAATGTGGTGAAATACAGAATGAAGGAAAGAGGGGACATTCAAGATGACATCCAAGGAATGACAGAAAGGGGAAAAGGAAGGGAAAGATGGGGGAGAGATGCAGCTATTCTTGATGTCAGAGACACTGTTCTGTTTACATCTATACTTCCAGATCCTGTGTAAATGTGTGTAAAGCAGTGTCCACCCATTTTTTGGCTAGATCCATTTACAGTAGAAAAGATTAGGGCAGGGCTTACAAATTTTAGTGCAAAAGAATCACTTGGAAAACTTGTTAAGATGCAGATTCTGATTCTGTAGGTTTGAAACAGGGTGTGAGATTCTGCATCCTGGATAGTGCTGCTGCTGTTGTTCTGTGGCCTGTACTTTACATAACAAGAAGTTAGGGTATTTCGATGCAGACAAGCCAAGTCTAAAGCCCATGGTTGTGAAAAAGAAACCAAAACAATCAGTTCCTTTCTCATCCCCAG
Seq C2 exon
GGATCATCTTCATTCCTGCGACCATCCTGTTGAAGGCCAAAGACATTCTCTATCGACTACAGTTGTCTAAAGCCAAGGGCATTGTGACCATAGATGCCCTTGCCTCAGAGGTGGACTCCATAGCTTCTCAGTGCCCCTCTCTGAAAACCAAGCTCCTGGTGTCTGATCACAGCCGTGAAGGGTGGCTGGACTTCCGATCGCTGGTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166743:ENST00000307493:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(16.9=100)
A:
NA
C2:
PF0050123=AMP-binding=PD(46.8=94.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains