HsaEX6042604 @ hg38
Exon Skipping
Gene
ENSG00000166743 | ACSM1
Description
acyl-CoA synthetase medium-chain family member 1 [Source:HGNC Symbol;Acc:HGNC:18049]
Coordinates
chr16:20671531-20697788:-
Coord C1 exon
chr16:20697636-20697788
Coord A exon
chr16:20682256-20682463
Coord C2 exon
chr16:20671531-20671671
Length
208 bp
Sequences
Splice sites
3' ss Seq
AGTTCCTTTCTCATCCCCAGGGA
3' ss Score
9.7
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GTCCCCCTTCGCTGTGGCCAGAAGCCAAGTTCTGCTGGGTGCACAATCCTGCGGATCACCTGATCAGAGAGAACTGAACCTACAAAAGAGAGCTCAACCTCCTTTTCCATACCTACCAGGGACCTAGTTCAGCTACGTCCTAAACAGTACCAG
Seq A exon
GGATCATCTTCATTCCTGCGACCATCCTGTTGAAGGCCAAAGACATTCTCTATCGACTACAGTTGTCTAAAGCCAAGGGCATTGTGACCATAGATGCCCTTGCCTCAGAGGTGGACTCCATAGCTTCTCAGTGCCCCTCTCTGAAAACCAAGCTCCTGGTGTCTGATCACAGCCGTGAAGGGTGGCTGGACTTCCGATCGCTGGTTAA
Seq C2 exon
ATCAGCATCCCCAGAACACACCTGTGTTAAGTCAAAGACCTTGGACCCAATGGTCATCTTCTTCACCAGTGGGACCACAGGCTTCCCCAAGATGGCAAAACACTCCCATGGGTTGGCCTTACAACCCTCCTTCCCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166743_MULTIEX2-3/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0050123=AMP-binding=PD(46.8=94.3)
C2:
PF0050123=AMP-binding=FE(11.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCGCTGTGGCCAGAAG
R:
CTTCCTGGGAAGGAGGGTTGT
Band lengths:
289-497
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains