BtaEX6108962 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001417 | ACSM1
Description
acyl-CoA synthetase medium-chain family member 1 [Source:HGNC Symbol;Acc:HGNC:18049]
Coordinates
chr25:18393149-18398797:+
Coord C1 exon
chr25:18393149-18393359
Coord A exon
chr25:18396213-18396420
Coord C2 exon
chr25:18398657-18398797
Length
208 bp
Sequences
Splice sites
3' ss Seq
AGTTTCCTTCCCATACCTAGGGA
3' ss Score
6.94
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
GAGGGCAAGAGAAGTCCAAACCCAGCCCTGTGGTGGGTGAACGATCAAGGGGATGAAGTGAAGTGGAGCTTCAGAGAGATGACAGACTTAACCTGTCGCACAGCCAACGTCCTGACACAGACCTGCGGCCTTCAGACGGGAGACCGTCTAGCGTTGATTTTGCCTCGAGTGCCTGAGTGGTGGCTTGTGTGTGTGGGCTGCATCCGAACAG
Seq A exon
GGATCATCTTCATGCCAGGGACCACCCAGATGAAGGCCAAGGACATTCTCTACCGACTACAAGTGTCTGGAGCCAAAGCCATCGTGACCACAGATACCCTTGCCCCAGAGGTGGAGTCTGTGGCACCTGAGTGTCCTTCTCTGAAAACCAAGCTCCTGGTGTCTGACCACAGCCGTGAAGGGTGGCTGGACTTCCGATCACTGGTTAA
Seq C2 exon
ATCAGCCTCCCCAGATCACATCTGTATTAAGTCAAAGACCCTGGACCCAATGGCCATCTTCTTCACCAGTGGGACCACGGGCTTCCCCAAGATGGCAAAGCACAGCCACGGATTCGCTTTACGATCCTATTTCCCAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001417-'4-13,'4-11,6-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(16.9=100)
A:
PF0050123=AMP-binding=FE(16.7=100)
C2:
PF0050123=AMP-binding=FE(11.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTGAACGATCAAGGGGAT
R:
TAAAGCGAATCCGTGGCTGTG
Band lengths:
299-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]